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{{UBERON
{{UBERON
|id=UBERON:0005352
|alt_id=
|name=spermatic cord
|namespace=
|def="the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
|xref=FMA:19937;;GAID:395;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png;;MESH:A.05.360.444.777;;ncithesaurus:Spermatic_Cord;;SCTID:181433005
|is_a=UBERON:0000061;;UBERON:0005156
|synonym="funiculus spermaticus" RELATED [];;"spermatic chord" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005352
|is_a=UBERON:0000477 ;;UBERON:0005156 ;;UBERON:0014403
|is_obsolete=
|located_in=
|located_in=
|name=spermatic cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004054
|part_of=UBERON:0004054
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="funiculus spermaticus" RELATED LATIN [Wikipedia:Spermatic_cord];;"spermatic chord" RELATED []
|union_of=
|xref=FMA:19937;;GAID:395;;http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png;;MESH:A.05.360.444.777;;ncithesaurus:Spermatic_Cord;;SCTID:181433005
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:spermatic cord
Namespace:FANTOM
Definition:"the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
Xrefs:
links:

FMA:19937
GAID:395
[ Male_anatomy.png Male_anatomy.png]
[ 200px-Male_anatomy.png 200px-Male_anatomy.png]
MESH:A.05.360.444.777
ncithesaurus:Spermatic_Cord

SCTID:181433005
Synonyms: "funiculus spermaticus" RELATED LATIN [Wikipedia:Spermatic_cord]
"spermatic chord" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0005156(reproductive structure),UBERON:0014403(male anatomical structure)
part_of:UBERON:0004054(internal male genitalia)



Children

part of:UBERON:0001000 (vas deferens)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005352 (spermatic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:18887940..18887947, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836225..43836234, -
9.37e-99FFCP PHASE2:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46p@chr5:179511281..179511283, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836115..43836122, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836771..43836789, -
9.37e-99FFCP PHASE1:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15731989..15732000, +
9.37e-99FFCP PHASE2:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:30182693..30182698, -
9.37e-99FFCP PHASE1:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853046..43853053, +
9.37e-99FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849948..91849962, +
9.37e-99FFCP PHASE1:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836518..43836524, -
9.37e-99FFCP PHASE1:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46p@chr12:126515178..126515204, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836666..43836681, -
9.37e-99FFCP PHASE2:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46p@chrX:152622610..152622615, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836287..43836295, -
9.37e-99FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43838343..43838355, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836620..43836625, -
9.37e-99FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15732081..15732088, +
9.37e-99FFCP PHASE2:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46p2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE1:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836544..43836571, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836225..43836234,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836225..43836234, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836329..43836334, -
9.37e-99FFCP PHASE2:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46p@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43853046..43853053,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853046..43853053, +
9.37e-99FFCP PHASE2:Hg19::chr19:15731989..15732000,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15731989..15732000, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836942..43836962, -
9.37e-99FFCP PHASE1:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:25179461..25179463, +
9.37e-99FFCP PHASE2:Hg19::chr2:219942197..219942226,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836696..43836705, -
9.37e-99FFCP PHASE2:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43850505..43850516, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836912..43836919, -
9.37e-99FFCP PHASE1:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:223648293..223648295, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836771..43836789,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836771..43836789, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836518..43836524,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836518..43836524, -
9.37e-99FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849918..91849931, +
9.37e-99FFCP PHASE2:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:1032745..1032750, -
9.37e-99FFCP PHASE1:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46p@chr6:70856430..70856440, +
9.37e-99FFCP PHASE2:Hg19::chr19:15732081..15732088,+#_9de1ffac85834d2503c5453b631f0b46p@chr19:15732081..15732088, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836170..43836181, -
9.37e-99FFCP PHASE1:Hg19::chr11:1032745..1032750,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:1032745..1032750, -
9.37e-99FFCP PHASE1:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:26217127..26217131, +
9.37e-99FFCP PHASE1:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853005..43853012, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836329..43836334, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836666..43836681,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836666..43836681, -
9.37e-99FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_9de1ffac85834d2503c5453b631f0b46p@chr12:126515178..126515204, +
9.37e-99FFCP PHASE2:Hg19::chr20:43838343..43838355,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43838343..43838355, +
9.37e-99FFCP PHASE1:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46p1@ENST00000527135
9.37e-99FFCP PHASE1:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836267..43836284, -
9.37e-99FFCP PHASE2:Hg19::chr1:25179461..25179463,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:25179461..25179463, +
9.37e-99FFCP PHASE1:Hg19::chr2:18887940..18887947,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:18887940..18887947, +
9.37e-99FFCP PHASE1:Hg19::chr5:179511281..179511283,+#_9de1ffac85834d2503c5453b631f0b46p@chr5:179511281..179511283, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836115..43836122,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836115..43836122, -
9.37e-99FFCP PHASE2:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46p@chr10:25623518..25623540, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836486..43836506,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836620..43836625,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836620..43836625, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836544..43836571, -
9.37e-99FFCP PHASE1:Hg19::chr10:25623518..25623540,-#_9de1ffac85834d2503c5453b631f0b46p@chr10:25623518..25623540, -
9.37e-99FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849948..91849962, +
9.37e-99FFCP PHASE2:Hg19::chr11:34592440..34592452,+#_9de1ffac85834d2503c5453b631f0b46p1@ENST00000527135
9.37e-99FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_9de1ffac85834d2503c5453b631f0b46p@chr2:223648293..223648295, +
9.37e-99FFCP PHASE1:Hg19::chr15:91849918..91849931,+#_9de1ffac85834d2503c5453b631f0b46p@chr15:91849918..91849931, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836696..43836705,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836696..43836705, -
9.37e-99FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_9de1ffac85834d2503c5453b631f0b46p@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836170..43836181,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836170..43836181, -
9.37e-99FFCP PHASE2:Hg19::chr6:70856430..70856440,+#_9de1ffac85834d2503c5453b631f0b46p@chr6:70856430..70856440, +
9.37e-99FFCP PHASE1:Hg19::chrX:152622610..152622615,+#_9de1ffac85834d2503c5453b631f0b46p@chrX:152622610..152622615, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836287..43836295,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836287..43836295, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836942..43836962,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836942..43836962, -
9.37e-99FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_9de1ffac85834d2503c5453b631f0b46p@chr1:26217127..26217131, +
9.37e-99FFCP PHASE2:Hg19::chr20:43853005..43853012,+#_9de1ffac85834d2503c5453b631f0b46p@chr20:43853005..43853012, +
9.37e-99FFCP PHASE1:Hg19::chr11:30182693..30182698,-#_9de1ffac85834d2503c5453b631f0b46p@chr11:30182693..30182698, -
9.37e-99FFCP PHASE1:Hg19::chr20:43850505..43850516,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43850505..43850516, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836912..43836919,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836912..43836919, -
9.37e-99FFCP PHASE1:Hg19::chr20:43835380..43835384,+#_9de1ffac85834d2503c5453b631f0b46p2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE2:Hg19::chr20:43836267..43836284,-#_9de1ffac85834d2503c5453b631f0b46p@chr20:43836267..43836284, -
2.55e-98FFCP PHASE1:Hg19::chr20:43837223..43837282,+#_a119b360826d0139a70b53f038a638f2p@chr20:43837223..43837282, +
2.55e-98FFCP PHASE1:Hg19::chr11:125657931..125657940,+#_a119b360826d0139a70b53f038a638f2p3@PATE3
2.55e-98FFCP PHASE1:Hg19::chr22:32000571..32000593,+#_a119b360826d0139a70b53f038a638f2p12@SFI1
2.55e-98FFCP PHASE2:Hg19::chr19:15733072..15733082,+#_a119b360826d0139a70b53f038a638f2p@chr19:15733072..15733082, +
2.55e-98FFCP PHASE2:Hg19::chr11:69715408..69715418,-#_a119b360826d0139a70b53f038a638f2p@chr11:69715408..69715418, -
2.55e-98FFCP PHASE1:Hg19::chr20:43850927..43850931,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850927..43850931, +
2.55e-98FFCP PHASE2:Hg19::chr20:43838283..43838286,+#_a119b360826d0139a70b53f038a638f2p@chr20:43838283..43838286, +
2.55e-98FFCP PHASE1:Hg19::chr17:2279627..2279651,+#_a119b360826d0139a70b53f038a638f2p2@SGSM2
2.55e-98FFCP PHASE1:Hg19::chr7:20655284..20655295,+#_a119b360826d0139a70b53f038a638f2p5@ABCB5
2.55e-98FFCP PHASE2:Hg19::chr20:43851172..43851181,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851172..43851181, +
2.55e-98FFCP PHASE2:Hg19::chr1:24982271..24982281,+#_a119b360826d0139a70b53f038a638f2p@chr1:24982271..24982281, +
2.55e-98FFCP PHASE2:Hg19::chr10:33624965..33624969,-#_a119b360826d0139a70b53f038a638f2p@chr10:33624965..33624969, -
2.55e-98FFCP PHASE1:Hg19::chr2:177684007..177684011,-#_a119b360826d0139a70b53f038a638f2p1@ENST00000451851
2.55e-98FFCP PHASE2:Hg19::chr20:43852004..43852005,+#_a119b360826d0139a70b53f038a638f2p@chr20:43852004..43852005, +
2.55e-98FFCP PHASE2:Hg19::chr19:15729846..15729851,+#_a119b360826d0139a70b53f038a638f2p@chr19:15729846..15729851, +
2.55e-98FFCP PHASE1:Hg19::chr20:43850640..43850649,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850640..43850649, +
2.55e-98FFCP PHASE2:Hg19::chr20:43837135..43837167,+#_a119b360826d0139a70b53f038a638f2p@chr20:43837135..43837167, +
2.55e-98FFCP PHASE1:Hg19::chr20:43836085..43836090,+#_a119b360826d0139a70b53f038a638f2p@chr20:43836085..43836090, +
2.55e-98FFCP PHASE2:Hg19::chr16:55909231..55909242,-#_a119b360826d0139a70b53f038a638f2p2@CES5A
2.55e-98FFCP PHASE2:Hg19::chr10:98351232..98351244,+#_a119b360826d0139a70b53f038a638f2p@chr10:98351232..98351244, +
2.55e-98FFCP PHASE2:Hg19::chr20:43850844..43850864,+#_a119b360826d0139a70b53f038a638f2p@chr20:43850844..43850864, +
2.55e-98FFCP PHASE1:Hg19::chr1:183230812..183230815,-#_a119b360826d0139a70b53f038a638f2p@chr1:183230812..183230815, -
2.55e-98FFCP PHASE2:Hg19::chr20:43851737..43851742,+#_a119b360826d0139a70b53f038a638f2p@chr20:43851737..43851742, +
2.55e-98FFCP PHASE1:Hg19::chr2:80773061..80773072,+#_a119b360826d0139a70b53f038a638f2p@chr2:80773061..80773072, +

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