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{{UBERON
{{UBERON
|id=UBERON:0005498
|alt_id=
|name=primitive heart tube
|namespace=
|def="Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [ZFA:0000149]
|xref=EHDAA:436;;EHDAA2:0001512;;EMAPA:16215;;SCTID:361522004;;ZFA:0000149
|is_a=UBERON:0000481;;UBERON:0004120
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [ZFA:0000149]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004291
|develops_from=UBERON:0004291
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005498
|is_a=UBERON:0000481 ;;UBERON:0002050 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=primitive heart tube
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0001512;;EHDAA:436;;EMAPA:16215;;SCTID:361522004;;TAO:0000149;;ZFA:0000149
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:primitive heart tube
Namespace:FANTOM
Definition:"Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [ZFA:0000149]
Xrefs:
links:

EHDAA2:0001512
EHDAA:436
EMAPA:16215
SCTID:361522004
TAO:0000149

ZFA:0000149
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0002050(embryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0004291(heart rudiment)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0004141 (heart tube)
part of:UBERON:0002061 (truncus arteriosus),UBERON:0006283 (future cardiac ventricle),UBERON:0007280 (presumptive endocardium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005498 (primitive heart tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_f412ca5050337f7f8749c4bdf6acc6a4p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_f412ca5050337f7f8749c4bdf6acc6a4p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_f412ca5050337f7f8749c4bdf6acc6a4p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_f412ca5050337f7f8749c4bdf6acc6a4p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_f412ca5050337f7f8749c4bdf6acc6a4p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_f412ca5050337f7f8749c4bdf6acc6a4p@chr9:24549775..24549776, -
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_87e5b145081bd067eb79b485e492b63ep@chr4:140980456..140980463, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_87e5b145081bd067eb79b485e492b63ep@chr4:140980456..140980463, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_df95c9c581a8eb1dfaea770be3c20511p@chr1:137737483..137737497, -
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_df95c9c581a8eb1dfaea770be3c20511p@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_df95c9c581a8eb1dfaea770be3c20511p@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_df95c9c581a8eb1dfaea770be3c20511p@chr12:113728951..113728965, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_7e95142989f30759f6269004c64df071p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_7e95142989f30759f6269004c64df071p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_7e95142989f30759f6269004c64df071p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_7e95142989f30759f6269004c64df071p@chr4:147375200..147375220, +
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_6b7c5e618663531f19325d6e488d2768p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_6b7c5e618663531f19325d6e488d2768p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_6b7c5e618663531f19325d6e488d2768p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_6b7c5e618663531f19325d6e488d2768p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_6b7c5e618663531f19325d6e488d2768p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_6b7c5e618663531f19325d6e488d2768p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_6b7c5e618663531f19325d6e488d2768p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_6b7c5e618663531f19325d6e488d2768p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_6b7c5e618663531f19325d6e488d2768p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_6b7c5e618663531f19325d6e488d2768p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_6b7c5e618663531f19325d6e488d2768p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_6b7c5e618663531f19325d6e488d2768p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_6b7c5e618663531f19325d6e488d2768p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_6b7c5e618663531f19325d6e488d2768p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_6b7c5e618663531f19325d6e488d2768p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_6b7c5e618663531f19325d6e488d2768p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_6b7c5e618663531f19325d6e488d2768p@chr14:55565785..55565833, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_301241cb8b70b8a1851796d604c71d8ap@chr1:137742152..137742184, -
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_301241cb8b70b8a1851796d604c71d8ap@chr1:137742152..137742184, -
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_f08521838182c36c801eb0af88b0a1c6p2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_f08521838182c36c801eb0af88b0a1c6p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_f08521838182c36c801eb0af88b0a1c6p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_f08521838182c36c801eb0af88b0a1c6p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_f08521838182c36c801eb0af88b0a1c6p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_f08521838182c36c801eb0af88b0a1c6p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_f08521838182c36c801eb0af88b0a1c6p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_f08521838182c36c801eb0af88b0a1c6p@chr16:5431481..5431510, +
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_3904e3be89e0a62ba3eee1756e816d69p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_3904e3be89e0a62ba3eee1756e816d69p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_3904e3be89e0a62ba3eee1756e816d69p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_3904e3be89e0a62ba3eee1756e816d69p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_3904e3be89e0a62ba3eee1756e816d69p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_3904e3be89e0a62ba3eee1756e816d69p11@Arhgap31
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_3904e3be89e0a62ba3eee1756e816d69p5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_3904e3be89e0a62ba3eee1756e816d69p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_3904e3be89e0a62ba3eee1756e816d69p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_3904e3be89e0a62ba3eee1756e816d69p1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_3904e3be89e0a62ba3eee1756e816d69p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_3904e3be89e0a62ba3eee1756e816d69p@chr19:36193739..36193752, -
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_4793c2bb7ccc46d1b0c4fb0c65a3dbbdp@chr9:24529233..24529237, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_4793c2bb7ccc46d1b0c4fb0c65a3dbbdp@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_0e767564f985027d5f5fdac7f8cdd0e8p6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_0e767564f985027d5f5fdac7f8cdd0e8p6@Usp20

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