UBERON:0001981: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_63183-XAO_0001011 | ||
|anatomical_img_id=FMA:63183 | |||
| | |||
|comment=note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. | |comment=note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. | ||
|created_by= | |created_by= | ||
| | |def="A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0004872;;UBERON:0006965 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001981 | |||
|is_a=UBERON:0000055 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=blood vessel | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0004537 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="region of vascular tree organ" EXACT [FMA:50722];;"vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel];;"vascular tree organ region" EXACT [FMA:50722] | ||
|union_of= | |||
|xref=AAO:0011004;;AEO:0000207;;BTO:0001102;;EFO:0000817;;EHDAA2:0003252;;EHDAA:240;;FMA:50722;;FMA:63183;;GAID:169;;http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png;;MA:0000060;;MAT:0000393;;MESH:A.07.231;;ncithesaurus:Blood_Vessel;;NIF_GrossAnatomy:nlx_anat_090901;;OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA;;SCTID:361097006;;TAO:0002137;;VHOG:0001250;;XAO:0001011;;ZFA:0005314 | |||
}} | }} |
Latest revision as of 17:23, 12 September 2014
Name: | blood vessel | |
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Namespace: | FANTOM | |
Definition: | "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] | |
Xrefs: |
| |
Synonyms: |
"region of vascular tree organ" EXACT [FMA:50722] "vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel] "vascular tree organ region" EXACT [FMA:50722] | |
Comments: | note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. | |
Alt_id: | UBERON:FMA_63183-XAO_0001011 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000055(vessel),UBERON:0004120(mesoderm-derived structure) |
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develops_from: | UBERON:0004872(splanchnic layer of lateral plate mesoderm),UBERON:0006965(vascular cord) |
part_of: | UBERON:0004537(blood vasculature) |
Children
is a: | UBERON:0001982 (capillary),UBERON:0003496 (head blood vessel),UBERON:0003504 (respiratory system blood vessel),UBERON:0003509 (arterial blood vessel),UBERON:0003513 (trunk blood vessel),UBERON:0003920 (venous blood vessel),UBERON:0010260 (umbilical blood vessel),UBERON:0013768 (great vessel of heart),UBERON:0014907 (intersomitic vessel) |
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disjoint from: | UBERON:0001473 (lymphatic vessel) |
part of: | UBERON:0004237 (blood vessel smooth muscle),UBERON:0004638 (blood vessel endothelium),UBERON:0004797 (blood vessel layer) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001981 (blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.