Personal tools

UBERON:0001981: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001981
|alt_id=UBERON:FMA_63183-XAO_0001011
|name=blood vessel
|anatomical_img_id=FMA:63183
|namespace=
|def="A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
|xref=AAO:0011004;;AEO:0000207;;BTO:0001102;;EFO:0000817;;EHDAA2:0003252;;EHDAA:240;;FMA:50722;;FMA:63183;;GAID:169;;http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png;;MA:0000060;;MAT:0000393;;MESH:A.07.231;;ncithesaurus:Blood_Vessel;;NIF_GrossAnatomy:nlx_anat_090901;;OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA;;SCTID:361097006;;TAO:0002137;;VHOG:0001250;;XAO:0001011;;ZFA:0005314
|is_a=UBERON:0000055;;UBERON:0004120;;UBERON:0007500
|synonym="region of vascular tree organ" EXACT [FMA:50722];;"vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel];;"vascular tree organ region" EXACT [FMA:50722]
|comment=note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids.
|comment=note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids.
|alt_id=UBERON:FMA_63183-XAO_0001011
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004872;;UBERON:0006965
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001981
|is_a=UBERON:0000055 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=blood vessel
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004537
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="region of vascular tree organ" EXACT [FMA:50722];;"vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel];;"vascular tree organ region" EXACT [FMA:50722]
|union_of=
|xref=AAO:0011004;;AEO:0000207;;BTO:0001102;;EFO:0000817;;EHDAA2:0003252;;EHDAA:240;;FMA:50722;;FMA:63183;;GAID:169;;http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png;;MA:0000060;;MAT:0000393;;MESH:A.07.231;;ncithesaurus:Blood_Vessel;;NIF_GrossAnatomy:nlx_anat_090901;;OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA;;SCTID:361097006;;TAO:0002137;;VHOG:0001250;;XAO:0001011;;ZFA:0005314
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:blood vessel
Namespace:FANTOM
Definition:"A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
Xrefs:
links:

AAO:0011004
AEO:0000207
BTO:0001102
EFO:0000817
EHDAA2:0003252
EHDAA:240
FMA:50722
FMA:63183
GAID:169
[1]
[ 200px-Circulatory_System_en.svg.png 200px-Circulatory_System_en.svg.png]
MA:0000060
MAT:0000393
MESH:A.07.231
ncithesaurus:Blood_Vessel
NIF_GrossAnatomy:nlx_anat_090901
OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA
SCTID:361097006
TAO:0002137
VHOG:0001250
XAO:0001011

ZFA:0005314
Synonyms: "region of vascular tree organ" EXACT [FMA:50722]
"vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel]
"vascular tree organ region" EXACT [FMA:50722]
Comments:note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids.
Alt_id: UBERON:FMA_63183-XAO_0001011
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000055(vessel),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0004872(splanchnic layer of lateral plate mesoderm),UBERON:0006965(vascular cord)
part_of:UBERON:0004537(blood vasculature)



Children

is a:UBERON:0001982 (capillary),UBERON:0003496 (head blood vessel),UBERON:0003504 (respiratory system blood vessel),UBERON:0003509 (arterial blood vessel),UBERON:0003513 (trunk blood vessel),UBERON:0003920 (venous blood vessel),UBERON:0010260 (umbilical blood vessel),UBERON:0013768 (great vessel of heart),UBERON:0014907 (intersomitic vessel)
disjoint from:UBERON:0001473 (lymphatic vessel)
part of:UBERON:0004237 (blood vessel smooth muscle),UBERON:0004638 (blood vessel endothelium),UBERON:0004797 (blood vessel layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001981 (blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.