Personal tools

UBERON:0003051: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003051
|alt_id=UBERON:0004373;;UBERON:XAO_0000006-ZFA_0000051
|name=ear vesicle
|namespace=
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;TAO:0000051;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
|is_a=UBERON:0005085;;UBERON:0005291;;UBERON:0007497;;UBERON:0010314;;UBERON:0010371
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|comment=
|comment=
|alt_id=UBERON:0004373;;UBERON:XAO_0000006-ZFA_0000051
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0009123
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003051
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0010314 ;;UBERON:0010371
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=ear vesicle
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000924
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|union_of=
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;TAO:0000051;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:ear vesicle
Namespace:FANTOM
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0009123(otic cup)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_75fc3970308be340c9f348f4c3017776p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_75fc3970308be340c9f348f4c3017776p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_75fc3970308be340c9f348f4c3017776p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_75fc3970308be340c9f348f4c3017776p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_75fc3970308be340c9f348f4c3017776p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_75fc3970308be340c9f348f4c3017776p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_75fc3970308be340c9f348f4c3017776p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_75fc3970308be340c9f348f4c3017776p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_75fc3970308be340c9f348f4c3017776p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_75fc3970308be340c9f348f4c3017776p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_75fc3970308be340c9f348f4c3017776p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_75fc3970308be340c9f348f4c3017776p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_75fc3970308be340c9f348f4c3017776p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_75fc3970308be340c9f348f4c3017776p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_75fc3970308be340c9f348f4c3017776p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_75fc3970308be340c9f348f4c3017776p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_75fc3970308be340c9f348f4c3017776p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_75fc3970308be340c9f348f4c3017776p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_75fc3970308be340c9f348f4c3017776p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_75fc3970308be340c9f348f4c3017776p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_75fc3970308be340c9f348f4c3017776p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_75fc3970308be340c9f348f4c3017776p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_75fc3970308be340c9f348f4c3017776p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_75fc3970308be340c9f348f4c3017776p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_75fc3970308be340c9f348f4c3017776p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_75fc3970308be340c9f348f4c3017776p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_75fc3970308be340c9f348f4c3017776p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_75fc3970308be340c9f348f4c3017776p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_75fc3970308be340c9f348f4c3017776p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_75fc3970308be340c9f348f4c3017776p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_75fc3970308be340c9f348f4c3017776p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_75fc3970308be340c9f348f4c3017776p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_75fc3970308be340c9f348f4c3017776p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_75fc3970308be340c9f348f4c3017776p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_75fc3970308be340c9f348f4c3017776p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_75fc3970308be340c9f348f4c3017776p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_75fc3970308be340c9f348f4c3017776p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_75fc3970308be340c9f348f4c3017776p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_75fc3970308be340c9f348f4c3017776p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_75fc3970308be340c9f348f4c3017776p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_75fc3970308be340c9f348f4c3017776p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_75fc3970308be340c9f348f4c3017776p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_75fc3970308be340c9f348f4c3017776p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_75fc3970308be340c9f348f4c3017776p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_75fc3970308be340c9f348f4c3017776p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_75fc3970308be340c9f348f4c3017776p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_75fc3970308be340c9f348f4c3017776p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_75fc3970308be340c9f348f4c3017776p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_75fc3970308be340c9f348f4c3017776p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_75fc3970308be340c9f348f4c3017776p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140781..154140788, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003051&oldid=3277494"