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{{UBERON
{{UBERON
|id=UBERON:0005597
|alt_id=
|name=lung primordium
|namespace=
|def="A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum." [XAO:0001002]
|xref=AAO:0011059;;XAO:0001002
|is_a=UBERON:0001048
|synonym="lateral diverticula" RELATED [XAO:0001002]
|comment=todo - check AAO diverticulum
|comment=todo - check AAO diverticulum
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum." [XAO:0001002]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0001041
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005597
|is_a=UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=lung primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0008947
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lateral diverticula" RELATED [XAO:0001002]
|union_of=
|xref=AAO:0011059;;XAO:0001002
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:lung primordium
Namespace:FANTOM
Definition:"A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum." [XAO:0001002]
Xrefs:
links:

AAO:0011059

XAO:0001002
Synonyms: "lateral diverticula" RELATED [XAO:0001002]
Comments:todo - check AAO diverticulum

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
develops_from:UBERON:0001041(foregut)
part_of:UBERON:0008947(respiratory primordium)



Children

develops from:UBERON:0000118 (lung bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005597 (lung primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_005ad38b2c17030c7ef90bf456bfc8e8p4@Tbx4
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_005ad38b2c17030c7ef90bf456bfc8e8p4@Tbx4
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_714fdbfddeb56586f43f27987981152ep1@ENSMUST00000134305
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_714fdbfddeb56586f43f27987981152ep1@ENSMUST00000134305
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_3ccfb1cc368722f6e6d637ea45e9ec39p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_3ccfb1cc368722f6e6d637ea45e9ec39p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_861a93f519cf330b11fde4e2d5a13f00p6@Tbx4
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_861a93f519cf330b11fde4e2d5a13f00p6@Tbx4
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_d43b7e509dc219011cdc3c86b84f13a9p@chr4:138812977..138812992, +
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr12:57636003..57636017, -
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr11:59457994..59457997, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr12:57636003..57636017, -
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_d43b7e509dc219011cdc3c86b84f13a9p@chr12:57598716..57598720, -
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_d43b7e509dc219011cdc3c86b84f13a9p@chr4:138812977..138812992, +
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_1fc60c3ee7c638e8fca5345b96d42fbfp8@Nkx2-1
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_1fc60c3ee7c638e8fca5345b96d42fbfp8@Nkx2-1
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_6219ef31674c0eff69bed3ff0c05d94dp2@E030019B13Rik
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_6219ef31674c0eff69bed3ff0c05d94dp2@E030019B13Rik
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_e4eed569e4ef029e919670d8f8d3a1d0p10@Nebl
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_e4eed569e4ef029e919670d8f8d3a1d0p10@Nebl
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_d898552ca17ba8f474238484d2d167adp9@Nkx2-1
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_d898552ca17ba8f474238484d2d167adp9@Nkx2-1
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_39f837c887ddd0ce60709668ed2f78a9p@chr12:57598537..57598547, -
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_39f837c887ddd0ce60709668ed2f78a9p3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_39f837c887ddd0ce60709668ed2f78a9p3@Trpm6
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_39f837c887ddd0ce60709668ed2f78a9p@chr12:57598537..57598547, -
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_39f837c887ddd0ce60709668ed2f78a9p3@Trpm6
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_39f837c887ddd0ce60709668ed2f78a9p3@E030019B13Rik
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_a5903cf75db3a16c48bb7b3000d317a3p@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_a5903cf75db3a16c48bb7b3000d317a3p@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_f682e54787f01f708bd962ce1eea13f6p@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_f682e54787f01f708bd962ce1eea13f6p@chr4:138812999..138813015, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_27f8f56aa02d7e92834484966c5e8cffp@chr5:120282691..120282701, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_27f8f56aa02d7e92834484966c5e8cffp@chr5:120282691..120282701, +
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_2520395157ed12708e2f04b3dbc30c56p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_2520395157ed12708e2f04b3dbc30c56p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_2520395157ed12708e2f04b3dbc30c56p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_2520395157ed12708e2f04b3dbc30c56p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_2520395157ed12708e2f04b3dbc30c56p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_2520395157ed12708e2f04b3dbc30c56p3@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_2520395157ed12708e2f04b3dbc30c56p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_2520395157ed12708e2f04b3dbc30c56p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_2520395157ed12708e2f04b3dbc30c56p4@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_2520395157ed12708e2f04b3dbc30c56p4@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_2520395157ed12708e2f04b3dbc30c56p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_2520395157ed12708e2f04b3dbc30c56p3@Sftpb
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_92cdc8cb1b87d8c07c2269e4f15847a8p4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_92cdc8cb1b87d8c07c2269e4f15847a8p4@E030019B13Rik
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_dd04a4d9d3bb653c95ccb7bbf47499afp@chr12:57623172..57623185, -
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_dd04a4d9d3bb653c95ccb7bbf47499afp@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_dd04a4d9d3bb653c95ccb7bbf47499afp@chr12:57623172..57623185, -
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_dd04a4d9d3bb653c95ccb7bbf47499afp@chr14:70922007..70922052, +
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_f5ec6523a4884a9ebe10dd4b6ea5e3f3p@chr5:28785436..28785450, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_f5ec6523a4884a9ebe10dd4b6ea5e3f3p@chr5:28785436..28785450, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_35df0b7b7a6ab864e9b5f4fc1ba05ecbp@chr14:70922459..70922482, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_35df0b7b7a6ab864e9b5f4fc1ba05ecbp@chr14:70922459..70922482, -
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_8832b21c4372df9e95b4185ee36e484cp4@Etv5
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_8832b21c4372df9e95b4185ee36e484cp4@Etv5
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_1966a4a2a328d97b78646a006fe6f206p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_1966a4a2a328d97b78646a006fe6f206p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_1966a4a2a328d97b78646a006fe6f206p4@Lamp3
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_1966a4a2a328d97b78646a006fe6f206p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_1966a4a2a328d97b78646a006fe6f206p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_1966a4a2a328d97b78646a006fe6f206p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_1966a4a2a328d97b78646a006fe6f206p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_1966a4a2a328d97b78646a006fe6f206p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_1966a4a2a328d97b78646a006fe6f206p@chr14:70923240..70923251, -
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_cd5f1a3288d24fbdb072b7e2748984f9p@chr6:72264609..72264653, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_cd5f1a3288d24fbdb072b7e2748984f9p@chr6:72264609..72264653, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_379670aee6a59f0ae18974728e0d38b9p@chr6:129378567..129378573, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_379670aee6a59f0ae18974728e0d38b9p@chr6:129378567..129378573, -
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_84ca5cd0effc6ffa131d04480da8d087p16@Pde5a
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_84ca5cd0effc6ffa131d04480da8d087p16@Pde5a
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_086194141e6e69691cdc0c8f658ab879p7@Nkx2-1
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_086194141e6e69691cdc0c8f658ab879p7@Nkx2-1
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_714f8c5137e262667bdc287079746e05p@chr12:57636936..57636953, -
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_714f8c5137e262667bdc287079746e05p@chr12:57636936..57636953, -
7.58e-62FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_985f89ddb8436a648b17725b6ff663f1p@chr14:41949922..41949935, +
7.58e-62FFCP PHASE2:Mm9::chr16:19673260..19673277,-#_985f89ddb8436a648b17725b6ff663f1p@chr16:19673260..19673277, -
7.58e-62FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_985f89ddb8436a648b17725b6ff663f1p6@E030019B13Rik
7.58e-62FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_985f89ddb8436a648b17725b6ff663f1p@chr14:70931508..70931519, +
7.58e-62FFCP PHASE1:Mm9::chr14:41949964..41949979,+#_985f89ddb8436a648b17725b6ff663f1p@chr14:41949964..41949979, +
7.58e-62FFCP PHASE2:Mm9::chr12:57630433..57630438,-#_985f89ddb8436a648b17725b6ff663f1p6@E030019B13Rik
7.58e-62FFCP PHASE2:Mm9::chr16:19673341..19673350,-#_985f89ddb8436a648b17725b6ff663f1p@chr16:19673341..19673350, -
7.58e-62FFCP PHASE2:Mm9::chr2:126950686..126950702,-#_985f89ddb8436a648b17725b6ff663f1p@chr2:126950686..126950702, -
7.58e-62FFCP PHASE2:Mm9::chr14:41951096..41951112,+#_985f89ddb8436a648b17725b6ff663f1p@chr14:41951096..41951112, +
7.58e-62FFCP PHASE2:Mm9::chr14:41949964..41949979,+#_985f89ddb8436a648b17725b6ff663f1p@chr14:41949964..41949979, +
7.58e-62FFCP PHASE1:Mm9::chr5:28785382..28785394,-#_985f89ddb8436a648b17725b6ff663f1p@chr5:28785382..28785394, -
7.58e-62FFCP PHASE2:Mm9::chr5:28785382..28785394,-#_985f89ddb8436a648b17725b6ff663f1p@chr5:28785382..28785394, -

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