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{{UBERON
{{UBERON
|id=UBERON:0001894
|alt_id=UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
|name=diencephalon
|anatomical_img_id=FMA:62001
|namespace=
|def="Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a>" [FMA:62001, Wikipedia:Diencephalon, ZFIN:curator]
|xref=AAO:0010481;;ABA:IB;;BM:Die;;BTO:0000342;;EFO:0000911;;EHDAA2:0000385;;EHDAA:1969;;EHDAA:2645;;EHDAA:3472;;EMAPA:16641;;EMAPA:16896;;EV:0100194;;FMA:62001;;GAID:618;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000171;;MAT:0000420;;MESH:A.08.186.211.730.385;;MIAA:0000420;;ncithesaurus:Diencephalon;;NIF_GrossAnatomy:birnlex_1503;;OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA;;SCTID:279328001;;TAO:0000101;;VHOG:0000318;;XAO:0000013;;ZFA:0000101
|is_a=UBERON:0002780;;UBERON:0010314
|synonym="between brain" EXACT [];;"betweenbrain" RELATED [BTO:0000342];;"diencephalon" RELATED LATIN [Wikipedia:Diencephalon];;"interbrain" EXACT [Swanson:2004];;"mature diencephalon" EXACT [FMA:62001]
|comment=Note that in ABA, this is part of the brain stem
|comment=Note that in ABA, this is part of the brain stem
|alt_id=UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=UBERON:0006222
|develops_from=UBERON:0006222
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001894
|is_a=UBERON:0002780 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=diencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001890
|part_of=UBERON:0001890
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001891;;"spatially_disjoint_from" UBERON:0002028;;UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001891;;"spatially_disjoint_from" UBERON:0002028;;UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="between brain" EXACT [];;"betweenbrain" RELATED [BTO:0000342];;"diencephalon" RELATED LATIN [Wikipedia:Diencephalon];;"interbrain" EXACT [Swanson:2004];;"mature diencephalon" EXACT [FMA:62001]
|union_of=
|xref=AAO:0010481;;ABA:IB;;BM:Die;;BTO:0000342;;EFO:0000911;;EHDAA2:0000385;;EHDAA:1969;;EHDAA:2645;;EHDAA:3472;;EMAPA:16641;;EMAPA:16896;;EV:0100194;;FMA:62001;;GAID:618;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000171;;MAT:0000420;;MESH:A.08.186.211.730.385;;MIAA:0000420;;ncithesaurus:Diencephalon;;NIF_GrossAnatomy:birnlex_1503;;OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA;;SCTID:279328001;;TAO:0000101;;VHOG:0000318;;XAO:0000013;;ZFA:0000101
}}
}}

Latest revision as of 17:22, 12 September 2014

Name:diencephalon
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href
Xrefs:
links:

AAO:0010481
ABA:IB
BM:Die
BTO:0000342
EFO:0000911
EHDAA2:0000385
EHDAA:1969
EHDAA:2645
EHDAA:3472
EMAPA:16641
EMAPA:16896
EV:0100194
FMA:62001
GAID:618
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000171
MAT:0000420
MESH:A.08.186.211.730.385
MIAA:0000420
ncithesaurus:Diencephalon
NIF_GrossAnatomy:birnlex_1503
OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
SCTID:279328001
TAO:0000101
VHOG:0000318
XAO:0000013

ZFA:0000101
Synonyms: "between brain" EXACT []
"betweenbrain" RELATED [BTO:0000342]
"diencephalon" RELATED LATIN [Wikipedia:Diencephalon]
"interbrain" EXACT [Swanson:2004]
"mature diencephalon" EXACT [FMA:62001]
Comments:Note that in ABA, this is part of the brain stem
Alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0006222(future diencephalon)
part_of:UBERON:0001890(forebrain)



Children

derives from:FF:0010193 (human diencephalon - adult sample),FF:0011291 (mouse diencephalon- adult sample),FF:0011470 (mouse diencephalon- neonate N30 sample)
part of:UBERON:0000007 (pituitary gland),UBERON:0002784 (regional part of diencephalon),UBERON:0003296 (gland of diencephalon),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001894 (diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.