UBERON:0001894: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101 | ||
|anatomical_img_id=FMA:62001 | |||
| | |||
|comment=Note that in ABA, this is part of the brain stem | |comment=Note that in ABA, this is part of the brain stem | ||
|created_by= | |created_by= | ||
| | |def="Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0006222 | |develops_from=UBERON:0006222 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001894 | |||
|is_a=UBERON:0002780 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=diencephalon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001890 | |part_of=UBERON:0001890 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001891;;"spatially_disjoint_from" UBERON:0002028;;UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001891;;"spatially_disjoint_from" UBERON:0002028;;UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="between brain" EXACT [];;"betweenbrain" RELATED [BTO:0000342];;"diencephalon" RELATED LATIN [Wikipedia:Diencephalon];;"interbrain" EXACT [Swanson:2004];;"mature diencephalon" EXACT [FMA:62001] | ||
|union_of= | |||
|xref=AAO:0010481;;ABA:IB;;BM:Die;;BTO:0000342;;EFO:0000911;;EHDAA2:0000385;;EHDAA:1969;;EHDAA:2645;;EHDAA:3472;;EMAPA:16641;;EMAPA:16896;;EV:0100194;;FMA:62001;;GAID:618;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000171;;MAT:0000420;;MESH:A.08.186.211.730.385;;MIAA:0000420;;ncithesaurus:Diencephalon;;NIF_GrossAnatomy:birnlex_1503;;OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA;;SCTID:279328001;;TAO:0000101;;VHOG:0000318;;XAO:0000013;;ZFA:0000101 | |||
}} | }} |
Latest revision as of 17:22, 12 September 2014
Name: | diencephalon | |
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Namespace: | FANTOM | |
Definition: | "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href | |
Xrefs: |
| |
Synonyms: |
"between brain" EXACT [] "betweenbrain" RELATED [BTO:0000342] "diencephalon" RELATED LATIN [Wikipedia:Diencephalon] "interbrain" EXACT [Swanson:2004] "mature diencephalon" EXACT [FMA:62001] | |
Comments: | Note that in ABA, this is part of the brain stem | |
Alt_id: | UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest) |
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develops_from: | UBERON:0006222(future diencephalon) |
part_of: | UBERON:0001890(forebrain) |
Children
derives from: | FF:0010193 (human diencephalon - adult sample),FF:0011291 (mouse diencephalon- adult sample),FF:0011470 (mouse diencephalon- neonate N30 sample) |
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part of: | UBERON:0000007 (pituitary gland),UBERON:0002784 (regional part of diencephalon),UBERON:0003296 (gland of diencephalon),UBERON:0010225 (thalamic complex) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10193-103E4 (diencephalon, adult)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
- 10377-105G8 (pineal gland, adult, donor10258)
... further results Mouse (Mus musculus)
- 10154-103A1 (thalamus, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10193-103E4 (diencephalon, adult)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001894 (diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.