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{{UBERON
{{UBERON
|id=UBERON:0003084
|alt_id=UBERON:XAO_0000336-ZFA_0000028
|name=heart primordium
|namespace=
|def="Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator]
|xref=AAO:0011044;;BTO:0001887;;ncithesaurus:Primordium_of_the_Heart;;TAO:0000028;;XAO:0000336;;ZFA:0000028
|is_a=UBERON:0001048
|synonym="fused heart primordium" RELATED []
|comment=editor note: should probably be fused with heart rudiment.
|comment=editor note: should probably be fused with heart rudiment.
|alt_id=UBERON:XAO_0000336-ZFA_0000028
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0003081;;UBERON:0004140;;UBERON:0007005
|develops_from=UBERON:0003081;;UBERON:0004140;;UBERON:0007005
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003084
|is_a=UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|name=heart primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004535
|part_of=UBERON:0004535
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string;;UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string;;UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="fused heart primordium" RELATED []
|union_of=
|xref=AAO:0011044;;BTO:0001887;;ncithesaurus:Primordium_of_the_Heart;;TAO:0000028;;XAO:0000336;;ZFA:0000028
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:heart primordium
Namespace:FANTOM
Definition:"Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator]
Xrefs:
links:

AAO:0011044
BTO:0001887
ncithesaurus:Primordium_of_the_Heart
TAO:0000028
XAO:0000336

ZFA:0000028
Synonyms: "fused heart primordium" RELATED []
Comments:editor note: should probably be fused with heart rudiment.
Alt_id: UBERON:XAO_0000336-ZFA_0000028
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0004140(primary heart field),UBERON:0007005(cardiac mesoderm)
part_of:UBERON:0004535(cardiovascular system)



Children

develops from:UBERON:0002165 (endocardium),UBERON:0004139 (cardiogenic plate),UBERON:0004291 (heart rudiment),UBERON:0007280 (presumptive endocardium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003084 (heart primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_ac04dc5960050155dd63a7248fccccfep@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_ac04dc5960050155dd63a7248fccccfep@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_ac04dc5960050155dd63a7248fccccfep@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_ac04dc5960050155dd63a7248fccccfep@chr4:147375434..147375447, +
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_ac04dc5960050155dd63a7248fccccfep@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_ac04dc5960050155dd63a7248fccccfep@chr4:147375434..147375447, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_44554ee53dee9a225aeeb97deba83156p@chr4:140980456..140980463, +
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_44554ee53dee9a225aeeb97deba83156p@chr4:140980456..140980463, +
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_cfb3bcaf0d35e3b754443fc2e9f6c83ap@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_cfb3bcaf0d35e3b754443fc2e9f6c83ap@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_cfb3bcaf0d35e3b754443fc2e9f6c83ap@chr12:113728951..113728965, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_cfb3bcaf0d35e3b754443fc2e9f6c83ap@chr1:137737483..137737497, -
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_87d018e522711c770dcb5927926bc9e8p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_87d018e522711c770dcb5927926bc9e8p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_87d018e522711c770dcb5927926bc9e8p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_87d018e522711c770dcb5927926bc9e8p@chr19:36187511..36187515, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_4726d7b5a384823cd17a6703515e88e4p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_4726d7b5a384823cd17a6703515e88e4p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_4726d7b5a384823cd17a6703515e88e4p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_4726d7b5a384823cd17a6703515e88e4p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_4726d7b5a384823cd17a6703515e88e4p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_4726d7b5a384823cd17a6703515e88e4p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_4726d7b5a384823cd17a6703515e88e4p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_4726d7b5a384823cd17a6703515e88e4p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_4726d7b5a384823cd17a6703515e88e4p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_4726d7b5a384823cd17a6703515e88e4p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_4726d7b5a384823cd17a6703515e88e4p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_4726d7b5a384823cd17a6703515e88e4p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_4726d7b5a384823cd17a6703515e88e4p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_4726d7b5a384823cd17a6703515e88e4p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_4726d7b5a384823cd17a6703515e88e4p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_4726d7b5a384823cd17a6703515e88e4p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_4726d7b5a384823cd17a6703515e88e4p@chr1:137747953..137747967, -
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_119fcdc75a31de64737a42fe955f11bep@chr1:137742152..137742184, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_119fcdc75a31de64737a42fe955f11bep@chr1:137742152..137742184, -
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_5245bf36f71938f823a820c64516df24p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_5245bf36f71938f823a820c64516df24p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_5245bf36f71938f823a820c64516df24p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_5245bf36f71938f823a820c64516df24p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_5245bf36f71938f823a820c64516df24p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_5245bf36f71938f823a820c64516df24p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_5245bf36f71938f823a820c64516df24p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_5245bf36f71938f823a820c64516df24p@chr1:137742470..137742481, +
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_4dde01754ca4fb0adae0478d93ce8bf8p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_4dde01754ca4fb0adae0478d93ce8bf8p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_4dde01754ca4fb0adae0478d93ce8bf8p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_4dde01754ca4fb0adae0478d93ce8bf8p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_4dde01754ca4fb0adae0478d93ce8bf8p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_4dde01754ca4fb0adae0478d93ce8bf8p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_4dde01754ca4fb0adae0478d93ce8bf8p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_4dde01754ca4fb0adae0478d93ce8bf8p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_4dde01754ca4fb0adae0478d93ce8bf8p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_4dde01754ca4fb0adae0478d93ce8bf8p5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_4dde01754ca4fb0adae0478d93ce8bf8p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_4dde01754ca4fb0adae0478d93ce8bf8p11@Arhgap31
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_09f5f002ce4aef7467aa85a1be272011p@chr9:24529233..24529237, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_09f5f002ce4aef7467aa85a1be272011p@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_907e061ae2fb718770cb6c87f29ffbadp6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_907e061ae2fb718770cb6c87f29ffbadp6@Usp20










Property "Property value" (as page type) with input value "UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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