FFCP PHASE1:Hg19::chr1:11866007..11866027,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:11866007..11866027,-
|short_description=p3@MTHFR
|description=CAGE_peak_3_at_MTHFR_5end
|association_with_transcript=-14bp_to_ENST00000418034_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4524 | |EntrezGene=4524 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7436 | |HGNC=7436 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SNW5 | |UniProt=Q5SNW5 | ||
|association_with_transcript=-14bp_to_ENST00000418034_5end | |||
|cluster_id=chr1:11866007..11866027,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_MTHFR_5end | |||
|id=chr1:11866007..11866027,- | |||
|ontology_enrichment_celltype=CL:0000037!3.16e-47!172;CL:0000566!3.16e-47!172;CL:0000988!2.56e-45!182;CL:0002032!6.98e-45!165;CL:0000837!6.98e-45!165;CL:0000738!8.71e-42!140;CL:0002031!1.42e-35!124;CL:0002087!8.12e-35!119;CL:0000763!1.54e-32!112;CL:0000049!1.54e-32!112;CL:0000766!4.63e-26!76;CL:0002057!5.23e-26!42;CL:0000557!9.55e-24!71;CL:0000839!1.97e-23!70;CL:0002009!2.09e-23!65;CL:0002194!1.15e-22!63;CL:0000576!1.15e-22!63;CL:0000040!1.15e-22!63;CL:0000559!1.15e-22!63;CL:0000860!1.55e-22!45;CL:0000838!2.51e-11!52;CL:0000542!6.55e-11!53;CL:0000051!6.55e-11!53;CL:0000945!1.54e-08!24;CL:0000826!1.54e-08!24;CL:0000236!3.85e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.24e-20;33!CL:0002057;1.24e-20;33!CL:0000473;1.87e-19;39!CL:0000234;1.87e-19;39!CL:0000576;4.40e-17;48!CL:0000766;1.40e-13;69!CL:0002087;4.39e-11;104!CL:0000763;1.11e-10;100!CL:0000738;3.11e-10;136!CL:0000945;9.12e-09;24!CL:0000988;1.60e-08;177!CL:0000236;3.17e-07;13!CL:0000542;5.48e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.48e-51,168;CL:0000988,1.35e-48,177;CL:0002032,1.51e-48,161;CL:0000837,1.51e-48,161;CL:0000738,1.66e-45,136;CL:0002031,2.55e-39,120;CL:0002087,1.38e-38,115;CL:0000763,1.94e-36,108;CL:0000049,1.94e-36,108;CL:0000766,4.25e-30,72;CL:0000473,2.49e-29,48;CL:0000234,2.49e-29,48;CL:0002009,7.81e-28,61;CL:0000557,1.21e-27,67;CL:0000839,2.54e-27,66;CL:0002194,4.55e-27,59;CL:0000576,4.55e-27,59;CL:0000040,4.55e-27,59;CL:0000559,4.55e-27,59;CL:0000860,6.40e-27,42;CL:0002057,6.40e-27,42;CL:0000838,1.64e-11,52;CL:0000542,7.38e-11,53;CL:0000051,7.38e-11,53;CL:0000945,8.48e-09,24;CL:0000826,8.48e-09,24;CL:0000236,2.38e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;8.90e-20;42!CL:0000049;1.41e-10;108!CL:0000051;5.48e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.06e-25!102;UBERON:0003061!9.06e-25!102;UBERON:0002193!4.05e-23!112;UBERON:0001474!5.45e-19!86;UBERON:0002371!9.18e-19!80;UBERON:0007023!2.43e-16!115;UBERON:0002405!2.04e-15!115;UBERON:0004765!1.65e-12!101;UBERON:0001434!1.65e-12!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.98e-28,98;UBERON:0003061,1.98e-28,98;UBERON:0002193,1.22e-26,108;UBERON:0001474,2.54e-22,82;UBERON:0002371,3.34e-22,76;UBERON:0002405,4.04e-22,93;UBERON:0004765,1.45e-17,90;UBERON:0007023,5.91e-17,114;UBERON:0001434,4.16e-14,100 | |||
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| ||
|short_description=p3@MTHFR | |||
}} | }} |
Latest revision as of 11:04, 16 September 2015
Short description: | p3@MTHFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MTHFR_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -14bp_to_ENST00000418034_5end |
EntrezGene: | MTHFR |
HGNC: | 7436 |
UniProt: | Q5SNW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.48e-51 | 168 |
hematopoietic cell | 1.35e-48 | 177 |
hematopoietic oligopotent progenitor cell | 1.51e-48 | 161 |
hematopoietic multipotent progenitor cell | 1.51e-48 | 161 |
leukocyte | 1.66e-45 | 136 |
hematopoietic lineage restricted progenitor cell | 2.55e-39 | 120 |
nongranular leukocyte | 1.38e-38 | 115 |
myeloid cell | 1.94e-36 | 108 |
common myeloid progenitor | 1.94e-36 | 108 |
myeloid leukocyte | 4.25e-30 | 72 |
defensive cell | 2.49e-29 | 48 |
phagocyte | 2.49e-29 | 48 |
macrophage dendritic cell progenitor | 7.81e-28 | 61 |
granulocyte monocyte progenitor cell | 1.21e-27 | 67 |
myeloid lineage restricted progenitor cell | 2.54e-27 | 66 |
monopoietic cell | 4.55e-27 | 59 |
monocyte | 4.55e-27 | 59 |
monoblast | 4.55e-27 | 59 |
promonocyte | 4.55e-27 | 59 |
classical monocyte | 6.40e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.40e-27 | 42 |
lymphoid lineage restricted progenitor cell | 1.64e-11 | 52 |
lymphocyte | 7.38e-11 | 53 |
common lymphoid progenitor | 7.38e-11 | 53 |
lymphocyte of B lineage | 8.48e-09 | 24 |
pro-B cell | 8.48e-09 | 24 |
B cell | 2.38e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.98e-28 | 98 |
blood island | 1.98e-28 | 98 |
hemolymphoid system | 1.22e-26 | 108 |
bone element | 2.54e-22 | 82 |
bone marrow | 3.34e-22 | 76 |
immune system | 4.04e-22 | 93 |
skeletal element | 1.45e-17 | 90 |
adult organism | 5.91e-17 | 114 |
skeletal system | 4.16e-14 | 100 |