FFCP PHASE1:Hg19::chr1:182992682..182992705,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:182992682..182992705,+
|short_description=p3@LAMC1
|description=CAGE_peak_3_at_LAMC1_5end
|association_with_transcript=85bp_to_ENST00000258341_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3915 | |EntrezGene=3915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |HGNC=6492 | ||
|TSSclassifier=strong | |||
|UniProt=P11047 | |UniProt=P11047 | ||
|association_with_transcript=85bp_to_ENST00000258341_5end | |||
|cluster_id=chr1:182992682..182992705,+ | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_3_at_LAMC1_5end | |||
|id=chr1:182992682..182992705,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.92e-32!180;CL:0000222!5.75e-25!119;CL:0000680!2.11e-21!57;CL:0000056!2.11e-21!57;CL:0000355!2.11e-21!57;CL:0000187!1.78e-20!54;CL:0000393!2.39e-20!60;CL:0000211!2.39e-20!60;CL:0000220!3.95e-20!246;CL:0002321!4.15e-20!248;CL:0000183!4.46e-20!59;CL:0000192!2.58e-15!42;CL:0000514!2.58e-15!42;CL:0000057!3.38e-14!75;CL:0000359!1.45e-13!32;CL:0002494!6.33e-10!16;CL:0002139!6.99e-07!24;CL:0000144!9.77e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.14e-13;32!CL:0000187;3.56e-12;55!CL:0000192;4.50e-12;43!CL:0000393;1.42e-11;61!CL:0000211;1.42e-11;61!CL:0002494;2.66e-10;16!CL:0000723;4.47e-08;61!CL:0000048;5.93e-08;58!CL:0000134;8.99e-08;55!CL:0002139;3.95e-07;24!CL:0002334;6.40e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.08e-26,121;CL:0000680,1.05e-22,58;CL:0000056,1.05e-22,58;CL:0000355,1.05e-22,58;CL:0000187,9.65e-22,55;CL:0000393,1.33e-21,61;CL:0000211,1.33e-21,61;CL:0002321,5.74e-20,250;CL:0000192,2.31e-16,43;CL:0000514,2.31e-16,43;CL:0000057,3.68e-15,76;CL:0000359,4.98e-14,32;CL:0002494,3.00e-10,16;CL:0002139,4.34e-07,24;CL:0002334,6.46e-07,12;CL:0000213,9.36e-07,58;CL:0000215,9.36e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000355;3.02e-12;58!CL:0000514;4.50e-12;43!CL:0000222;4.50e-07;121 | |||
|ontology_enrichment_disease=DOID:2394!3.66e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.28e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.22e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!2.90e-24!84;UBERON:0002049!3.41e-24!79;UBERON:0007798!3.41e-24!79;UBERON:0004290!5.07e-23!70;UBERON:0000914!1.70e-22!83;UBERON:0002329!1.70e-22!83;UBERON:0003077!1.70e-22!83;UBERON:0003059!1.70e-22!83;UBERON:0007282!1.70e-22!83;UBERON:0009618!1.70e-22!83;UBERON:0007285!1.70e-22!83;UBERON:0001134!3.17e-22!61;UBERON:0002036!3.17e-22!61;UBERON:0003082!3.17e-22!61;UBERON:0002385!8.51e-22!63;UBERON:0001015!8.51e-22!63;UBERON:0000383!8.51e-22!63;UBERON:0000486!1.63e-21!82;UBERON:0001009!1.86e-21!113;UBERON:0004535!4.53e-21!110;UBERON:0003914!1.01e-20!118;UBERON:0000055!1.02e-20!69;UBERON:0000490!1.72e-20!138;UBERON:0005256!1.94e-19!143;UBERON:0002100!2.99e-19!216;UBERON:0001981!3.95e-19!60;UBERON:0007500!3.95e-19!60;UBERON:0004537!3.95e-19!60;UBERON:0006965!3.95e-19!60;UBERON:0001637!2.80e-17!42;UBERON:0003509!2.80e-17!42;UBERON:0004572!2.80e-17!42;UBERON:0004573!7.13e-15!33;UBERON:0004571!7.13e-15!33;UBERON:0003104!1.25e-14!238;UBERON:0009142!1.25e-14!238;UBERON:0000119!2.12e-12!312;UBERON:0000468!6.97e-12!659;UBERON:0000483!9.02e-12!309;UBERON:0000475!9.08e-12!365;UBERON:0000481!3.62e-11!347;UBERON:0007100!6.08e-11!27;UBERON:0000948!7.58e-11!24;UBERON:0005498!7.58e-11!24;UBERON:0004140!7.58e-11!24;UBERON:0009881!7.58e-11!24;UBERON:0004141!7.58e-11!24;UBERON:0003084!7.58e-11!24;UBERON:0007005!7.58e-11!24;UBERON:0004139!7.58e-11!24;UBERON:0004291!7.58e-11!24;UBERON:0000926!1.27e-09!448;UBERON:0004120!1.27e-09!448;UBERON:0006603!1.27e-09!448;UBERON:0000467!3.40e-09!625;UBERON:0000480!6.08e-09!626;UBERON:0000947!1.56e-08!21;UBERON:0010191!1.56e-08!21;UBERON:0000477!3.93e-08!286;UBERON:0003103!6.99e-08!69;UBERON:0004111!1.01e-07!241;UBERON:0001013!1.75e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.87e-14;33!UBERON:0004571;4.87e-14;33!UBERON:0001637;3.65e-13;42!UBERON:0003509;3.65e-13;42!UBERON:0004572;3.65e-13;42!UBERON:0002385;5.67e-11;31!UBERON:0001015;5.67e-11;31!UBERON:0000383;5.67e-11;31!UBERON:0007500;1.14e-10;56!UBERON:0001981;1.14e-10;56!UBERON:0004537;1.14e-10;56!UBERON:0007100;1.15e-10;25!UBERON:0000948;1.36e-10;22!UBERON:0000055;2.06e-10;65!UBERON:0002049;3.71e-10;75!UBERON:0007798;3.71e-10;75!UBERON:0000947;8.72e-09;21!UBERON:0010191;8.72e-09;21!UBERON:0003914;9.05e-08;74!UBERON:0001013;9.54e-08;14!UBERON:0001009;7.16e-07;112!UBERON:0004535;9.29e-07;109 | |||
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| ||
|short_description=p3@LAMC1 | |||
}} | }} |
Latest revision as of 01:48, 19 September 2015
Short description: | p3@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | 85bp_to_ENST00000258341_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.08e-26 | 121 |
muscle precursor cell | 1.05e-22 | 58 |
myoblast | 1.05e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.05e-22 | 58 |
muscle cell | 9.65e-22 | 55 |
electrically responsive cell | 1.33e-21 | 61 |
electrically active cell | 1.33e-21 | 61 |
embryonic cell | 5.74e-20 | 250 |
smooth muscle cell | 2.31e-16 | 43 |
smooth muscle myoblast | 2.31e-16 | 43 |
fibroblast | 3.68e-15 | 76 |
vascular associated smooth muscle cell | 4.98e-14 | 32 |
cardiocyte | 3.00e-10 | 16 |
endothelial cell of vascular tree | 4.34e-07 | 24 |
preadipocyte | 6.46e-07 | 12 |
lining cell | 9.36e-07 | 58 |
barrier cell | 9.36e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.22e-07 | 14 |