FFCP PHASE1:Hg19::chr1:28520450..28520453,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:28520450..28520453,-
|short_description=p21@PTAFR
|description=CAGE_peak_21_at_PTAFR_5end
|association_with_transcript=-3bp_to_ENST00000539896,NM_001164721...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5724 | |EntrezGene=5724 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9582 | |HGNC=9582 | ||
|TSSclassifier=strong | |||
|UniProt=A8K7N8,P25105 | |UniProt=A8K7N8,P25105 | ||
|association_with_transcript=-3bp_to_ENST00000539896,NM_001164721,NM_001164722,uc001bpm.3,uc009vte.2_5end | |||
|cluster_id=chr1:28520450..28520453,- | |||
|coexpression_cluster_id=C253 | |||
|description=CAGE_peak_21_at_PTAFR_5end | |||
|id=chr1:28520450..28520453,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.76e-57;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.28e-17!115;UBERON:0002075!5.10e-10!18;UBERON:0001007!7.05e-09!155;UBERON:0001555!7.05e-09!155;UBERON:0007026!7.05e-09!155;UBERON:0002106!1.87e-08!3;UBERON:0004854!1.87e-08!3;UBERON:0009034!1.87e-08!3;UBERON:0002095!1.87e-08!3;UBERON:0004782!1.87e-08!3;UBERON:0003281!1.87e-08!3;UBERON:0009664!1.87e-08!3;UBERON:0002296!1.87e-08!3;UBERON:0005602!1.87e-08!3;UBERON:0001179!1.87e-08!3;UBERON:0006293!1.87e-08!3;UBERON:0005409!2.25e-08!35;UBERON:0004119!8.45e-08!169;UBERON:0000925!8.45e-08!169;UBERON:0006595!8.45e-08!169;UBERON:0002110!1.04e-07!3;UBERON:0006242!1.04e-07!3;UBERON:0004177!1.63e-07!7;UBERON:0000996!6.59e-07!1;UBERON:0002084!6.96e-07!1;UBERON:0002082!6.96e-07!1;UBERON:0004706!6.96e-07!1;UBERON:0000945!8.01e-07!8;UBERON:0010039!8.01e-07!8;UBERON:0000989!8.21e-07!1;UBERON:0008811!8.21e-07!1;UBERON:0006258!8.21e-07!1;UBERON:0005876!8.21e-07!1;UBERON:0004874!8.21e-07!1;UBERON:0000029!8.67e-07!1;UBERON:0000998!9.15e-07!1;UBERON:0006868!9.15e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.98e-131;3!UBERON:0004177;3.49e-79;5!UBERON:0005057;3.49e-79;5!UBERON:0002075;3.88e-23;18!UBERON:0000077;6.71e-16;27!UBERON:0002405;6.71e-16;27!UBERON:0002390;1.84e-13;32!UBERON:0004458;8.88e-10;48!UBERON:0002553;1.47e-07;52!UBERON:0002323;1.47e-07;45!UBERON:0002193;3.42e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.98e-131,3;UBERON:0004854,8.98e-131,3;UBERON:0009034,8.98e-131,3;UBERON:0002095,8.98e-131,3;UBERON:0004782,8.98e-131,3;UBERON:0003281,8.98e-131,3;UBERON:0009664,8.98e-131,3;UBERON:0002296,8.98e-131,3;UBERON:0005602,8.98e-131,3;UBERON:0001179,8.98e-131,3;UBERON:0006293,8.98e-131,3;UBERON:0004177,4.76e-57,7;UBERON:0005057,4.76e-57,7;UBERON:0000945,3.99e-50,8;UBERON:0010039,3.99e-50,8;UBERON:0004457,5.98e-34,12;UBERON:0000042,5.98e-34,12;UBERON:0003887,5.98e-34,12;UBERON:0002075,3.88e-23,18;UBERON:0005409,1.86e-16,25;UBERON:0000077,6.74e-15,29;UBERON:0002323,7.07e-10,46;UBERON:0004458,2.38e-09,49;UBERON:0005172,1.34e-08,54;UBERON:0003886,1.34e-08,54;UBERON:0005173,1.34e-08,54;UBERON:0002417,7.34e-08,60;UBERON:0000916,7.34e-08,60;UBERON:0002553,9.44e-08,61;UBERON:0004923,2.96e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,1.12780701575824,1.86927875123374,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0.129177819672012,0,0,0.0636471582781649,0.404234377916439,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,1.12780701575824,1.86927875123374,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0.129177819672012,0,0,0.0636471582781649,0.404234377916439,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0.665756774185513,0,0 | ||
|short_description=p21@PTAFR | |||
}} | }} |
Latest revision as of 10:04, 17 September 2015
Short description: | p21@PTAFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_PTAFR_5end |
Coexpression cluster: | C253_spleen_rhabdomyosarcoma_Hepatocyte_small_uterus_liver_rectum |
Association with transcript: | -3bp_to_ENST00000539896, NM_001164721, NM_001164722, uc001bpm.3, uc009vte.2_5end |
EntrezGene: | PTAFR |
HGNC: | 9582 |
UniProt: | A8K7N8P25105 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
spleen | 8.98e-131 | 3 |
gastrointestinal system mesentery | 8.98e-131 | 3 |
stomach region | 8.98e-131 | 3 |
mesentery | 8.98e-131 | 3 |
gastrointestinal system serosa | 8.98e-131 | 3 |
mesentery of stomach | 8.98e-131 | 3 |
gut mesentery | 8.98e-131 | 3 |
dorsal mesentery | 8.98e-131 | 3 |
dorsal mesogastrium | 8.98e-131 | 3 |
peritoneal cavity | 8.98e-131 | 3 |
spleen primordium | 8.98e-131 | 3 |
hemopoietic organ | 4.76e-57 | 7 |
immune organ | 4.76e-57 | 7 |
stomach | 3.99e-50 | 8 |
food storage organ | 3.99e-50 | 8 |
cavity lining | 5.98e-34 | 12 |
serous membrane | 5.98e-34 | 12 |
intraembryonic coelom | 5.98e-34 | 12 |
viscus | 3.88e-23 | 18 |
gastrointestinal system | 1.86e-16 | 25 |
mixed endoderm/mesoderm-derived structure | 6.74e-15 | 29 |
body cavity | 7.07e-10 | 46 |
body cavity or lining | 2.38e-09 | 49 |
abdomen element | 1.34e-08 | 54 |
body cavity precursor | 1.34e-08 | 54 |
abdominal segment element | 1.34e-08 | 54 |
abdominal segment of trunk | 7.34e-08 | 60 |
abdomen | 7.34e-08 | 60 |
anatomical cavity | 9.44e-08 | 61 |
organ component layer | 2.96e-07 | 66 |