FFCP PHASE1:Hg19::chr10:50818377..50818400,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6572 | |EntrezGene=6572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |HGNC=10936 | ||
|TSSclassifier=strong | |||
|UniProt=Q16572 | |UniProt=Q16572 | ||
|association_with_transcript=30bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |association_with_transcript=30bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | ||
|cluster_id=chr10:50818377..50818400,+ | |||
|coexpression_cluster_id=C1313 | |coexpression_cluster_id=C1313 | ||
|description=CAGE_peak_1_at_SLC18A3_5end | |description=CAGE_peak_1_at_SLC18A3_5end | ||
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|ontology_enrichment_celltype=CL:0000349!3.44e-11!3;CL:0002577!3.44e-11!3;CL:0002536!2.15e-07!2;CL:0002537!6.89e-07!5 | |ontology_enrichment_celltype=CL:0000349!3.44e-11!3;CL:0002577!3.44e-11!3;CL:0002536!2.15e-07!2;CL:0002537!6.89e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002577;2.70e-38;3!CL:0000349;8.47e-32;19!CL:0002537;2.05e-23;5!CL:0002097;1.81e-07;2 | |ontology_enrichment_celltype_v019=CL:0002577;2.70e-38;3!CL:0000349;8.47e-32;19!CL:0002537;2.05e-23;5!CL:0002097;1.81e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.06e-38,3;CL:0000349,7.90e-32,19;CL:0002537,1.90e-23,5;CL:0002097,1.99e-07,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:171!4.67e-15!10;DOID:169!9.31e-09!6 | |ontology_enrichment_disease=DOID:171!4.67e-15!10;DOID:169!9.31e-09!6 | ||
|ontology_enrichment_disease_v019=DOID:171;8.42e-12;10!DOID:154;1.81e-07;2!DOID:4236;1.81e-07;2 | |ontology_enrichment_disease_v019=DOID:171;8.42e-12;10!DOID:154;1.81e-07;2!DOID:4236;1.81e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:171,8.74e-12,10;DOID:154,1.87e-07,2;DOID:4236,1.87e-07,2 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.47e-43,14;UBERON:0000158,2.47e-43,14;UBERON:0001987,7.04e-29,4;UBERON:0004340,7.04e-29,4;UBERON:0003124,7.32e-29,7;UBERON:0000478,4.16e-25,24;UBERON:0000305,6.07e-17,7;UBERON:0004871,6.64e-15,8;UBERON:0004923,8.97e-09,66;UBERON:0002148,2.25e-07,2;UBERON:0006331,2.25e-07,2;UBERON:0009662,2.25e-07,2 | |||
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| ||
|short_description=p1@SLC18A3 | |short_description=p1@SLC18A3 | ||
}} | }} |
Latest revision as of 10:10, 18 September 2015
Short description: | p1@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | 30bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.06e-38 | 3 |
extraembryonic cell | 7.90e-32 | 19 |
amnion mesenchymal stem cell | 1.90e-23 | 5 |
cortical cell of adrenal gland | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.47e-43 | 14 |
membranous layer | 2.47e-43 | 14 |
placenta | 7.04e-29 | 4 |
allantois | 7.04e-29 | 4 |
chorion | 7.32e-29 | 7 |
extraembryonic structure | 4.16e-25 | 24 |
amnion | 6.07e-17 | 7 |
somatic layer of lateral plate mesoderm | 6.64e-15 | 8 |
organ component layer | 8.97e-09 | 66 |
locus ceruleus | 2.25e-07 | 2 |
brainstem nucleus | 2.25e-07 | 2 |
hindbrain nucleus | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.74e-12 | 10 |
mixed cell type cancer | 1.87e-07 | 2 |
carcinosarcoma | 1.87e-07 | 2 |