FFCP PHASE1:Hg19::chr4:40192752..40192763,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=399 | |EntrezGene=399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=686 | |HGNC=686 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=79bp_to_ENST00000505618_5end | |association_with_transcript=79bp_to_ENST00000505618_5end | ||
|cluster_id=chr4:40192752..40192763,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_19_at_RHOH_5end | |description=CAGE_peak_19_at_RHOH_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000542!2.76e-26!53;CL:0000051!2.76e-26!53;CL:0000084!3.42e-24!25;CL:0000827!3.42e-24!25;CL:0000838!7.79e-24!52;CL:0000791!8.77e-24!18;CL:0000789!8.77e-24!18;CL:0002420!8.77e-24!18;CL:0002419!8.77e-24!18;CL:0000790!8.77e-24!18;CL:0000625!7.58e-20!11;CL:0002087!2.50e-10!119;CL:0000738!3.88e-08!140;CL:0002031!1.49e-07!124;CL:0000624!2.09e-07!6 | |ontology_enrichment_celltype=CL:0000542!2.76e-26!53;CL:0000051!2.76e-26!53;CL:0000084!3.42e-24!25;CL:0000827!3.42e-24!25;CL:0000838!7.79e-24!52;CL:0000791!8.77e-24!18;CL:0000789!8.77e-24!18;CL:0002420!8.77e-24!18;CL:0002419!8.77e-24!18;CL:0000790!8.77e-24!18;CL:0000625!7.58e-20!11;CL:0002087!2.50e-10!119;CL:0000738!3.88e-08!140;CL:0002031!1.49e-07!124;CL:0000624!2.09e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000625;6.11e-13;11!CL:0000084;1.44e-12;25!CL:0000791;2.70e-08;18!CL:0000789;2.70e-08;18!CL:0002419;2.70e-08;18 | |ontology_enrichment_celltype_v019=CL:0000625;6.11e-13;11!CL:0000084;1.44e-12;25!CL:0000791;2.70e-08;18!CL:0000789;2.70e-08;18!CL:0002419;2.70e-08;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000625,5.76e-13,11;CL:0000084,1.44e-12,25;CL:0000827,1.44e-12,25;CL:0000791,2.61e-08,18;CL:0000789,2.61e-08,18;CL:0002420,2.61e-08,18;CL:0002419,2.61e-08,18;CL:0000790,2.61e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;2.70e-08;18 | |ontology_enrichment_development_v019=CL:0000790;2.70e-08;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!9.69e-07!7 | |ontology_enrichment_uberon=UBERON:0004177!9.69e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.41e-67;2!UBERON:0005058;7.41e-67;2!UBERON:0009113;7.41e-67;2!UBERON:0004177;1.59e-27;5!UBERON:0005057;1.59e-27;5!UBERON:0002390;1.59e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0002370;7.41e-67;2!UBERON:0005058;7.41e-67;2!UBERON:0009113;7.41e-67;2!UBERON:0004177;1.59e-27;5!UBERON:0005057;1.59e-27;5!UBERON:0002390;1.59e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.28e-34,4;UBERON:0005058,4.28e-34,4;UBERON:0009113,4.28e-34,4;UBERON:0003295,4.28e-34,4;UBERON:0005562,4.28e-34,4;UBERON:0003351,3.88e-23,6;UBERON:0004177,5.35e-20,7;UBERON:0005057,5.35e-20,7;UBERON:0000974,2.49e-14,10;UBERON:0003408,2.49e-14,10;UBERON:0001042,2.49e-14,10;UBERON:0009145,2.49e-14,10;UBERON:0006562,4.00e-13,11;UBERON:0009722,4.00e-13,11;UBERON:0007690,4.00e-13,11;UBERON:0008814,2.09e-08,18;UBERON:0001557,5.16e-08,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0.501559486172034,0.651844533267181,0,0,0,0,0.221533894583621,0.270803863765016,0.25618263945135,0.130059347559878,0.164437904603676,0,0,0.14828656316206,0.535081656179426,0,0.113309342697566,0,0,0.253019692019503,0.318565414324097,1.30216690771284,1.90090408889675,0.150575119077773,0.383959833463255,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0.557409525377156,0.144269212976445,1.06712765022621,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,3.48780113114433,3.04166100049704,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0.501559486172034,0.651844533267181,0,0,0,0,0.221533894583621,0.270803863765016,0.25618263945135,0.130059347559878,0.164437904603676,0,0,0.14828656316206,0.535081656179426,0,0.113309342697566,0,0,0.253019692019503,0.318565414324097,1.30216690771284,1.90090408889675,0.150575119077773,0.383959833463255,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0.557409525377156,0.144269212976445,1.06712765022621,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,3.48780113114433,3.04166100049704,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p19@RHOH | |short_description=p19@RHOH | ||
}} | }} |
Latest revision as of 18:01, 17 September 2015
Short description: | p19@RHOH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_RHOH_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 79bp_to_ENST00000505618_5end |
EntrezGene: | RHOH |
HGNC: | 686 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 5.76e-13 | 11 |
T cell | 1.44e-12 | 25 |
pro-T cell | 1.44e-12 | 25 |
mature alpha-beta T cell | 2.61e-08 | 18 |
alpha-beta T cell | 2.61e-08 | 18 |
immature T cell | 2.61e-08 | 18 |
mature T cell | 2.61e-08 | 18 |
immature alpha-beta T cell | 2.61e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.28e-34 | 4 |
hemolymphoid system gland | 4.28e-34 | 4 |
thymic region | 4.28e-34 | 4 |
pharyngeal gland | 4.28e-34 | 4 |
thymus primordium | 4.28e-34 | 4 |
pharyngeal epithelium | 3.88e-23 | 6 |
hemopoietic organ | 5.35e-20 | 7 |
immune organ | 5.35e-20 | 7 |
neck | 2.49e-14 | 10 |
gland of gut | 2.49e-14 | 10 |
chordate pharynx | 2.49e-14 | 10 |
pharyngeal region of foregut | 2.49e-14 | 10 |
pharynx | 4.00e-13 | 11 |
entire pharyngeal arch endoderm | 4.00e-13 | 11 |
early pharyngeal endoderm | 4.00e-13 | 11 |
pharyngeal arch system | 2.09e-08 | 18 |
upper respiratory tract | 5.16e-08 | 19 |