FFCP PHASE1:Hg19::chr20:29956369..29956413,+: Difference between revisions
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|id=chr20:29956369..29956413,+
|short_description=p1@DEFB118
|description=CAGE_peak_1_at_DEFB118_5end
|association_with_transcript=-7bp_to_ENST00000253381,NM_054112...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=117285 | |EntrezGene=117285 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16196 | |HGNC=16196 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PH6 | |UniProt=Q96PH6 | ||
|association_with_transcript=-7bp_to_ENST00000253381,NM_054112_5end | |||
|cluster_id=chr20:29956369..29956413,+ | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_1_at_DEFB118_5end | |||
|id=chr20:29956369..29956413,+ | |||
|ontology_enrichment_celltype=CL:0002274!2.57e-34!5;CL:0000457!2.57e-34!5;CL:0002191!2.57e-34!5;CL:0000097!2.57e-34!5;CL:0000831!2.57e-34!5;CL:0002028!2.57e-34!5;CL:0000163!3.18e-19!9 | |||
|ontology_enrichment_celltype_v019=CL:0000097;3.10e-11;5!CL:0000163;8.14e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.94e-11,5;CL:0002028,2.94e-11,5;CL:0000163,7.91e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0007297;4.32e-26;2!UBERON:0009117;9.93e-21;10!UBERON:0005564;9.93e-21;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006947!1.95e-32!3;UBERON:0004054!1.95e-32!3;UBERON:0005904!1.64e-24!4;UBERON:0003135!3.18e-24!11;UBERON:0000473!1.18e-12!8;UBERON:0001301!2.63e-12!1;UBERON:0003101!4.35e-12!22;UBERON:0000079!4.35e-12!22;UBERON:0000998!6.97e-12!1;UBERON:0006868!6.97e-12!1;UBERON:0001000!7.76e-12!1;UBERON:0005352!7.76e-12!1;UBERON:0002146!8.64e-12!1;UBERON:0005623!8.64e-12!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;1.46e-50;1!UBERON:0003135;5.00e-41;11!UBERON:0000473;1.34e-25;8!UBERON:0003101;4.42e-21;22!UBERON:0000079;4.42e-21;22!UBERON:0006947;6.76e-18;3!UBERON:0004054;6.76e-18;3!UBERON:0005904;8.82e-14;4!UBERON:0000991;1.81e-10;21!UBERON:0003133;1.95e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.46e-50,1;UBERON:0003135,5.35e-41,11;UBERON:0000473,1.43e-25,8;UBERON:0003101,4.58e-21,22;UBERON:0000079,4.58e-21,22;UBERON:0006947,6.76e-18,3;UBERON:0004054,6.76e-18,3;UBERON:0005904,8.82e-14,4;UBERON:0000991,1.86e-10,21;UBERON:0009196,1.86e-10,21;UBERON:0009117,1.86e-10,21;UBERON:0005564,1.86e-10,21;UBERON:0003133,3.53e-10,48;UBERON:0004176,4.96e-10,22;UBERON:0003886,3.82e-09,54;UBERON:0005156,1.93e-08,59;UBERON:0000990,1.93e-08,59;UBERON:0002553,3.42e-08,61;UBERON:0005103,1.49e-07,8;UBERON:0000083,1.49e-07,8;UBERON:0009201,1.49e-07,8;UBERON:0006553,1.49e-07,8;UBERON:0003074,1.49e-07,8;UBERON:0003060,1.49e-07,8;UBERON:0000080,7.48e-07,9;UBERON:0002120,7.48e-07,9;UBERON:0004875,7.48e-07,9;UBERON:0005721,7.48e-07,9;UBERON:0005754,7.48e-07,9;UBERON:0007297,7.48e-07,9 | |||
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|short_description=p1@DEFB118 | |||
}} | }} |
Latest revision as of 00:18, 25 September 2015
Short description: | p1@DEFB118 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DEFB118_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | -7bp_to_ENST00000253381, NM_054112_5end |
EntrezGene: | DEFB118 |
HGNC: | 16196 |
UniProt: | Q96PH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.94e-11 | 5 |
basophil mast progenitor cell | 2.94e-11 | 5 |
endocrine cell | 7.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
epididymis | 1.46e-50 | 1 |
male reproductive organ | 5.35e-41 | 11 |
testis | 1.43e-25 | 8 |
male organism | 4.58e-21 | 22 |
male reproductive system | 4.58e-21 | 22 |
male genital duct | 6.76e-18 | 3 |
internal male genitalia | 6.76e-18 | 3 |
duct of male reproductive system | 8.82e-14 | 4 |
gonad | 1.86e-10 | 21 |
indifferent external genitalia | 1.86e-10 | 21 |
indifferent gonad | 1.86e-10 | 21 |
gonad primordium | 1.86e-10 | 21 |
reproductive organ | 3.53e-10 | 48 |
external genitalia | 4.96e-10 | 22 |
body cavity precursor | 3.82e-09 | 54 |
reproductive structure | 1.93e-08 | 59 |
reproductive system | 1.93e-08 | 59 |
anatomical cavity | 3.42e-08 | 61 |
mesonephric epithelium | 1.49e-07 | 8 |
mesonephric tubule | 1.49e-07 | 8 |
nephric duct | 1.49e-07 | 8 |
renal duct | 1.49e-07 | 8 |
mesonephric duct | 1.49e-07 | 8 |
pronephric duct | 1.49e-07 | 8 |
mesonephros | 7.48e-07 | 9 |
pronephros | 7.48e-07 | 9 |
nephrogenic cord | 7.48e-07 | 9 |
pronephric mesoderm | 7.48e-07 | 9 |
rostral part of nephrogenic cord | 7.48e-07 | 9 |
presumptive pronephric mesoderm | 7.48e-07 | 9 |