FFCP PHASE1:Hg19::chr19:8121246..8121282,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:8121246..8121282,+ | |||
|coexpression_cluster_id=C2507 | |coexpression_cluster_id=C2507 | ||
|description=CAGE_peak_at_chr19:8121246..8121282,+ | |description=CAGE_peak_at_chr19:8121246..8121282,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!3.29e-23!4;UBERON:0005058!3.29e-23!4;UBERON:0009113!3.29e-23!4;UBERON:0003295!3.29e-23!4;UBERON:0005562!3.29e-23!4;UBERON:0003351!7.79e-16!6;UBERON:0002108!6.73e-14!14;UBERON:0004177!1.02e-13!7;UBERON:0000160!5.28e-13!27;UBERON:0005409!3.33e-10!35;UBERON:0000974!6.78e-10!10;UBERON:0003408!6.78e-10!10;UBERON:0001042!6.78e-10!10;UBERON:0009145!6.78e-10!10;UBERON:0006562!4.43e-09!11;UBERON:0009722!4.43e-09!11;UBERON:0007690!4.43e-09!11;UBERON:0002369!1.51e-08!3;UBERON:0001235!1.51e-08!3;UBERON:0006858!1.51e-08!3;UBERON:0008814!6.79e-07!15 | |ontology_enrichment_uberon=UBERON:0002370!3.29e-23!4;UBERON:0005058!3.29e-23!4;UBERON:0009113!3.29e-23!4;UBERON:0003295!3.29e-23!4;UBERON:0005562!3.29e-23!4;UBERON:0003351!7.79e-16!6;UBERON:0002108!6.73e-14!14;UBERON:0004177!1.02e-13!7;UBERON:0000160!5.28e-13!27;UBERON:0005409!3.33e-10!35;UBERON:0000974!6.78e-10!10;UBERON:0003408!6.78e-10!10;UBERON:0001042!6.78e-10!10;UBERON:0009145!6.78e-10!10;UBERON:0006562!4.43e-09!11;UBERON:0009722!4.43e-09!11;UBERON:0007690!4.43e-09!11;UBERON:0002369!1.51e-08!3;UBERON:0001235!1.51e-08!3;UBERON:0006858!1.51e-08!3;UBERON:0008814!6.79e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.03e-66;2!UBERON:0005058;2.03e-66;2!UBERON:0009113;2.03e-66;2!UBERON:0004177;2.38e-27;5!UBERON:0005057;2.38e-27;5!UBERON:0002108;2.72e-27;4!UBERON:0000160;3.30e-17;17!UBERON:0005409;1.20e-13;22!UBERON:0002114;2.89e-12;2!UBERON:0004921;5.33e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0002370;2.03e-66;2!UBERON:0005058;2.03e-66;2!UBERON:0009113;2.03e-66;2!UBERON:0004177;2.38e-27;5!UBERON:0005057;2.38e-27;5!UBERON:0002108;2.72e-27;4!UBERON:0000160;3.30e-17;17!UBERON:0005409;1.20e-13;22!UBERON:0002114;2.89e-12;2!UBERON:0004921;5.33e-08;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.98e-34,4;UBERON:0005058,5.98e-34,4;UBERON:0009113,5.98e-34,4;UBERON:0003295,5.98e-34,4;UBERON:0005562,5.98e-34,4;UBERON:0002108,3.11e-27,4;UBERON:0003351,4.86e-23,6;UBERON:0004177,6.48e-20,7;UBERON:0005057,6.48e-20,7;UBERON:0000160,3.49e-17,17;UBERON:0000974,2.84e-14,10;UBERON:0003408,2.84e-14,10;UBERON:0001042,2.84e-14,10;UBERON:0009145,2.84e-14,10;UBERON:0006562,4.52e-13,11;UBERON:0009722,4.52e-13,11;UBERON:0007690,4.52e-13,11;UBERON:0002114,3.24e-12,2;UBERON:0005409,3.79e-12,25;UBERON:0008814,2.25e-08,18;UBERON:0001557,5.54e-08,19;UBERON:0004921,2.29e-07,118 | |||
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|short_description=p@chr19:8121246..8121282,+ | |short_description=p@chr19:8121246..8121282,+ | ||
}} | }} |
Latest revision as of 18:37, 27 July 2015
Short description: | p@chr19:8121246..8121282, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:8121246..8121282, + |
Coexpression cluster: | C2507_thymus_small_colon_duodenum_temporal_vein_throat |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 5.98e-34 | 4 |
hemolymphoid system gland | 5.98e-34 | 4 |
thymic region | 5.98e-34 | 4 |
pharyngeal gland | 5.98e-34 | 4 |
thymus primordium | 5.98e-34 | 4 |
small intestine | 3.11e-27 | 4 |
pharyngeal epithelium | 4.86e-23 | 6 |
hemopoietic organ | 6.48e-20 | 7 |
immune organ | 6.48e-20 | 7 |
intestine | 3.49e-17 | 17 |
neck | 2.84e-14 | 10 |
gland of gut | 2.84e-14 | 10 |
chordate pharynx | 2.84e-14 | 10 |
pharyngeal region of foregut | 2.84e-14 | 10 |
pharynx | 4.52e-13 | 11 |
entire pharyngeal arch endoderm | 4.52e-13 | 11 |
early pharyngeal endoderm | 4.52e-13 | 11 |
duodenum | 3.24e-12 | 2 |
gastrointestinal system | 3.79e-12 | 25 |
pharyngeal arch system | 2.25e-08 | 18 |
upper respiratory tract | 5.54e-08 | 19 |
subdivision of digestive tract | 2.29e-07 | 118 |