FFCP PHASE1:Hg19::chr1:110155692..110155710,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2780 | |EntrezGene=2780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4394 | |HGNC=4394 | ||
|TSSclassifier=strong | |||
|UniProt=P19087,Q5T697 | |UniProt=P19087,Q5T697 | ||
|association_with_transcript=0bp_to_NM_005272,uc001dya.2_5end | |association_with_transcript=0bp_to_NM_005272,uc001dya.2_5end | ||
|cluster_id=chr1:110155692..110155710,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_1_at_GNAT2_5end | |description=CAGE_peak_1_at_GNAT2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000306!1.92e-07!4;CL:0002222!1.92e-07!4;CL:0002224!1.92e-07!4 | |ontology_enrichment_celltype=CL:0000306!1.92e-07!4;CL:0002222!1.92e-07!4;CL:0002224!1.92e-07!4 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.89e-53;3 | |ontology_enrichment_development_v019=UBERON:0003056;4.89e-53;3 | ||
|ontology_enrichment_disease=DOID:5409!1.80e-07!4 | |ontology_enrichment_disease=DOID:5409!1.80e-07!4 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p1@GNAT2 | |short_description=p1@GNAT2 | ||
}} | }} |
Latest revision as of 22:19, 15 September 2015
Short description: | p1@GNAT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNAT2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_NM_005272, uc001dya.2_5end |
EntrezGene: | GNAT2 |
HGNC: | 4394 |
UniProt: | P19087Q5T697 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.34e-79 | 2 |
regional part of epithalamus | 2.34e-79 | 2 |
secretory circumventricular organ | 2.34e-79 | 2 |
circumventricular organ | 2.34e-79 | 2 |
epithalamus | 2.34e-79 | 2 |
gland of diencephalon | 2.22e-40 | 4 |
neuroendocrine gland | 2.22e-40 | 4 |
regional part of diencephalon | 2.22e-40 | 4 |
retina | 3.55e-27 | 6 |
photoreceptor array | 3.55e-27 | 6 |
posterior segment of eyeball | 3.55e-27 | 6 |
diencephalon | 1.28e-23 | 7 |
future diencephalon | 1.28e-23 | 7 |
eye | 9.85e-18 | 21 |
visual system | 9.85e-18 | 21 |
sense organ | 1.25e-15 | 24 |
sensory system | 1.25e-15 | 24 |
entire sense organ system | 1.25e-15 | 24 |
pre-chordal neural plate | 6.84e-11 | 61 |
camera-type eye | 6.42e-09 | 20 |
simple eye | 6.42e-09 | 20 |
immature eye | 6.42e-09 | 20 |
ocular region | 6.42e-09 | 20 |
eyeball of camera-type eye | 6.42e-09 | 20 |
optic cup | 6.42e-09 | 20 |
optic vesicle | 6.42e-09 | 20 |
eye primordium | 6.42e-09 | 20 |
neural plate | 2.69e-08 | 82 |
presumptive neural plate | 2.69e-08 | 82 |
face | 3.39e-08 | 22 |
neurectoderm | 6.09e-08 | 86 |