FFCP PHASE1:Hg19::chr22:22901636..22901715,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr22:22901636..22901715,-
|short_description=p1@PRAME
|description=CAGE_peak_1_at_PRAME_5end
|association_with_transcript=0bp_to_ENST00000402697,ENST0000040650...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23532 | |EntrezGene=23532 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9336 | |HGNC=9336 | ||
|TSSclassifier=strong | |||
|UniProt=P78395,B5MCY4,E7EW99 | |UniProt=P78395,B5MCY4,E7EW99 | ||
|association_with_transcript=0bp_to_ENST00000402697,ENST00000406503,ENST00000439106,ENST00000543184,NM_006115,NM_206953,NM_206954,uc002zwi.2,uc002zwj.2,uc002zwk.2_5end | |||
|cluster_id=chr22:22901636..22901715,- | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_1_at_PRAME_5end | |||
|id=chr22:22901636..22901715,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.31e-08;6!CL:0002255;1.31e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,1.37e-08,6;CL:0002255,1.37e-08,6;CL:0000066,2.73e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.56e-11;29 | |||
|ontology_enrichment_disease=DOID:14566!3.02e-52!239;DOID:162!6.63e-52!235;DOID:0050687!1.06e-31!143;DOID:0050686!6.49e-29!137;DOID:305!3.20e-24!106;DOID:2531!8.73e-14!51;DOID:0060083!8.73e-14!51;DOID:1240!9.21e-12!39;DOID:8692!5.77e-11!31;DOID:1036!6.11e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.93e-15;31!DOID:1240;2.56e-12;39!DOID:0050687;1.08e-10;143!DOID:2531;7.24e-10;51!DOID:0060083;7.24e-10;51!DOID:299;1.71e-09;25!DOID:1036;3.04e-09;8!DOID:305;8.29e-09;106!DOID:3001;1.31e-08;6!DOID:162;5.00e-08;235!DOID:0050686;3.58e-07;137!DOID:1115;6.12e-07;20!DOID:14566;6.41e-07;239 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.55e-57,239;DOID:162,4.06e-56,235;DOID:0050687,4.73e-40,143;DOID:0050686,1.99e-30,137;DOID:305,1.00e-29,106;DOID:8692,7.65e-15,31;DOID:1240,1.85e-14,39;DOID:2531,5.09e-14,51;DOID:0060083,5.09e-14,51;DOID:299,1.73e-09,25;DOID:1036,3.32e-09,8;DOID:3001,1.37e-08,6;DOID:1115,6.29e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.58e-08!9;UBERON:0002113!4.74e-07!27;UBERON:0003918!4.74e-07!27;UBERON:0005095!4.74e-07!27;UBERON:0007687!4.74e-07!27;UBERON:0005177!5.67e-07!107;UBERON:0003886!7.29e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.38e-11;9!UBERON:0001557;1.38e-11;9!UBERON:0000072;2.82e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.25e-11,9;UBERON:0008947,1.13e-07,38;UBERON:0003258,1.13e-07,38 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.57470412614962,0.314843125254717,0,0,0,0,0,0,0.852139206383318,0,0.293600439334847,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0.443458794925128,0.087834785693126,14.8661250689904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.207322110030741,0,0,0,0,0,0,0,11.357452803825,12.9810211360138,7.95336398615491,9.92645754591546,13.944284421914,10.9144484791104,11.3258298854538,17.4637103961558,9.61867892365976,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,3.35964256397719,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561320188866147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,2.46449078734127,1.56869953835371,0,0.844413031143006,0,0,0.647747748306418,0,2.16757150035082,2.00675909541941,0.764628819135115,0.831076008928724,0.671624264166535,0,0,0,0,0,0.618246069886334,1.37354197227515,5.11558899507645,0,0,0,0,0,0.15350367472613,0,0.429680979473094,0.145016693914229,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.961416640147258,3.84991942105343,3.18552280775341,0,0,7.61217723828031,60.7414099096813,0,0.5745161103971,5.50351315082095,4.22008522356922,0,51.5810374615014,9.08743395483535,0,45.5394882286313,31.1540865701177,18.7673727687674,0,3.77855879231341,23.9647796160597,29.7489223496913,29.3654489412959,55.8809952849835,0,0,0,1.33228787199128,0,0,0,53.3986295697859,0.891547074219827,11.3654458722565,0,0,0,0,0,0,1.48323486804084,64.604374887166,0,0.276283915531148,16.8794941062365,0,4.18488338567636,0,0,1.9692329214317,0,0.0986434056369336,0,0,0,0,0,0,0,0,4.21035758656349,0,26.2390326762409,3.44743373241465,0,3.29887490373255,0,0,0,0.221158519862449,0,0,4.79329239483557,0,0,1.82307289355202,0.922255617552241,29.9790532328639,3.69401064534827,0,0.366390373607449,0,1.02193298195737,14.5991638447373,10.4713359597099,212.285516640767,208.414473979757,221.692316395088,47.6281869137705,0.317873157960757,37.9796516150449,7.99840759979824,0,27.4813572472456,0,0.176915129006678,0,2.37216902944498,4.2011739241811,3.86361213170185,0,0,0,10.2174681960773,7.6309201383515,7.04063100648869,0.394584402849391,0,0,0.063186579628488,0.150323419414493,1.14057010536972,13.9577313268509,26.8103484259154,9.73192047062398,13.1419672750255,10.2459436570725,57.5499893004525,8.85154665509168,2.93977192243133,0,0.34945333648406,0,9.86914579148669,4.38535902517113,11.5782794445025,0,38.7444396175686,0,28.9158461004644,19.871461170299,0,5.86654148204409,7.69524674414724,0,3.19695375331408,8.78951544640046,69.7527870650426,66.7504541683042,0,12.922263698805,0,13.9981332255822,16.5272497173486,0,0,0,0.136905378891993,1.27746588066972,10.314370594079,0,0,0,0,3.59422200898184,0,0,0,0,0,0.236349546921671,0.329663433524666,0.0674035438541849,0,0.338693328263138,0,0.136203406111576,0,0,0,0,0,0,0,0.315222829196793,0.524545881349981,1.5840050477911,11.2951023779692,0,0,0,14.7475751839755,0,0,0,0,11.5750454256568,0,33.2004428153968,0,0,0,0.26446520348538,13.6869470307464,0,0,0,0,0,31.815472735569,0.852548188666271,2.55336503108073,0,0.2506898940227,0,0,0.942324577501406,0,0,0,0.573409195690071,0,0.124192805882767,61.7034911815589,0,60.6596470166591,100.198332074284,14.8217466409848,0.468334905806882,64.4898577318172,0,0,0,0,0.251567901752575,0,0,0,0,0,0.477890301491107,0.449803112163605,0.310525913752519,0,0,0,0,0.380805212168795,0.406870733204662,0.545545977607678,0,0,1.59238355479446,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0.489473409012935,0,0.617602894321944,0,0,0,0,2.04993214870357,0,0,0,0.974301544196942,1.19578356282027,4.08913485639611,17.3633219888599,18.6787410652827,0,0,12.2695489148262,0.344429959321631,0,0,0,0,30.5667547415728,0,0.629063767423586,2.07498312564826,14.5969975760462,0,9.04731079090716,6.70373901567893,0.318004350653419,1.10406443001755,36.0256836728461,0,0,0.256916900385838,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,24.8529573381636,0,0.150420656698515,0.20170506870352,0,0.261906694481422,0,6.80137996598408,0,0,0,0,0,0,0,0,0.127762427639595,3.21421101526972,6.05310699993883,0,0,0.177404740325278,0,0,0.135939465953663,0,10.992027202209,11.234371591099,0,0,1.4013608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| ||
|short_description=p1@PRAME | |||
}} | }} |
Latest revision as of 07:45, 19 September 2015
Short description: | p1@PRAME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRAME_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000402697, ENST00000406503, ENST00000439106, ENST00000543184, NM_006115, NM_206953, NM_206954, uc002zwi.2, uc002zwj.2, uc002zwk.2_5end |
EntrezGene: | PRAME |
HGNC: | 9336 |
UniProt: | P78395B5MCY4E7EW99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 1.37e-08 | 6 |
stromal cell of endometrium | 1.37e-08 | 6 |
epithelial cell | 2.73e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.25e-11 | 9 |
respiratory primordium | 1.13e-07 | 38 |
endoderm of foregut | 1.13e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.55e-57 | 239 |
cancer | 4.06e-56 | 235 |
cell type cancer | 4.73e-40 | 143 |
organ system cancer | 1.99e-30 | 137 |
carcinoma | 1.00e-29 | 106 |
myeloid leukemia | 7.65e-15 | 31 |
leukemia | 1.85e-14 | 39 |
hematologic cancer | 5.09e-14 | 51 |
immune system cancer | 5.09e-14 | 51 |
adenocarcinoma | 1.73e-09 | 25 |
chronic leukemia | 3.32e-09 | 8 |
female reproductive endometrioid cancer | 1.37e-08 | 6 |
sarcoma | 6.29e-07 | 20 |