FFCP PHASE1:Hg19::chr13:43636336..43636347,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:43636336..43636347,+ | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_at_chr13:43636336..43636347,+ | |description=CAGE_peak_at_chr13:43636336..43636347,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000349!3.97e-13!3;CL:0002577!3.97e-13!3;CL:0002541!9.07e-13!3;CL:0002536!2.66e-09!2;CL:0002537!4.26e-08!5 | |ontology_enrichment_celltype=CL:0000349!3.97e-13!3;CL:0002577!3.97e-13!3;CL:0002541!9.07e-13!3;CL:0002536!2.66e-09!2;CL:0002537!4.26e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.53e-61;19!CL:0002577;4.02e-36;3!CL:0002536;1.22e-24;2!CL:0002537;3.21e-22;5!CL:0002541;9.26e-17;3!CL:0002097;5.28e-07;2 | |ontology_enrichment_celltype_v019=CL:0000349;5.53e-61;19!CL:0002577;4.02e-36;3!CL:0002536;1.22e-24;2!CL:0002537;3.21e-22;5!CL:0002541;9.26e-17;3!CL:0002097;5.28e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.36e-61,19;CL:0002577,3.79e-36,3;CL:0002536,1.15e-24,2;CL:0002537,3.33e-22,5;CL:0002541,9.26e-17,3;CL:0002097,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005754;9.73e-13;1!UBERON:0007297;5.28e-07;2 | |ontology_enrichment_development_v019=UBERON:0005754;9.73e-13;1!UBERON:0007297;5.28e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:170;1.36e-08;6!DOID:4929;4.42e-07;2!DOID:3493;5.28e-07;2 | |ontology_enrichment_disease_v019=DOID:170;1.36e-08;6!DOID:4929;4.42e-07;2!DOID:3493;5.28e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:170,1.36e-08,6;DOID:4929,4.17e-07,2;DOID:3493,5.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.24e-40!14;UBERON:0000158!9.24e-40!14;UBERON:0000478!1.65e-34!24;UBERON:0003124!9.97e-28!7;UBERON:0001987!1.02e-16!4;UBERON:0004340!1.02e-16!4;UBERON:0000305!9.13e-15!7;UBERON:0004871!7.14e-13!8;UBERON:0000476!9.07e-13!3;UBERON:0000920!9.07e-13!3;UBERON:0004923!1.30e-10!57 | |ontology_enrichment_uberon=UBERON:0005631!9.24e-40!14;UBERON:0000158!9.24e-40!14;UBERON:0000478!1.65e-34!24;UBERON:0003124!9.97e-28!7;UBERON:0001987!1.02e-16!4;UBERON:0004340!1.02e-16!4;UBERON:0000305!9.13e-15!7;UBERON:0004871!7.14e-13!8;UBERON:0000476!9.07e-13!3;UBERON:0000920!9.07e-13!3;UBERON:0004923!1.30e-10!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.95e-58;24!UBERON:0005631;2.01e-57;10!UBERON:0000158;2.01e-57;10!UBERON:0000305;1.95e-42;7!UBERON:0001987;2.76e-27;4!UBERON:0003124;9.26e-17;3!UBERON:0000920;9.26e-17;3!UBERON:0000998;9.73e-13;1!UBERON:0006868;9.73e-13;1!UBERON:0004923;1.94e-07;55 | |ontology_enrichment_uberon_v019=UBERON:0000478;4.95e-58;24!UBERON:0005631;2.01e-57;10!UBERON:0000158;2.01e-57;10!UBERON:0000305;1.95e-42;7!UBERON:0001987;2.76e-27;4!UBERON:0003124;9.26e-17;3!UBERON:0000920;9.26e-17;3!UBERON:0000998;9.73e-13;1!UBERON:0006868;9.73e-13;1!UBERON:0004923;1.94e-07;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.99e-83,14;UBERON:0000158,3.99e-83,14;UBERON:0000478,5.09e-58,24;UBERON:0000305,1.95e-42,7;UBERON:0003124,3.86e-42,7;UBERON:0004871,3.77e-37,8;UBERON:0001987,2.64e-27,4;UBERON:0004340,2.64e-27,4;UBERON:0000920,9.26e-17,3;UBERON:0004923,9.56e-17,66;UBERON:0000998,8.64e-13,1;UBERON:0006868,8.64e-13,1;UBERON:0004175,8.84e-08,25 | |||
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| ||
|short_description=p@chr13:43636336..43636347,+ | |short_description=p@chr13:43636336..43636347,+ | ||
}} | }} |
Latest revision as of 16:08, 24 July 2015
Short description: | p@chr13:43636336..43636347, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:43636336..43636347, + |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.36e-61 | 19 |
placental epithelial cell | 3.79e-36 | 3 |
amniotic epithelial cell | 1.15e-24 | 2 |
amnion mesenchymal stem cell | 3.33e-22 | 5 |
chorionic membrane mesenchymal stem cell | 9.26e-17 | 3 |
cortical cell of adrenal gland | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.99e-83 | 14 |
membranous layer | 3.99e-83 | 14 |
extraembryonic structure | 5.09e-58 | 24 |
amnion | 1.95e-42 | 7 |
chorion | 3.86e-42 | 7 |
somatic layer of lateral plate mesoderm | 3.77e-37 | 8 |
placenta | 2.64e-27 | 4 |
allantois | 2.64e-27 | 4 |
egg chorion | 9.26e-17 | 3 |
organ component layer | 9.56e-17 | 66 |
seminal vesicle | 8.64e-13 | 1 |
seminal fluid secreting gland | 8.64e-13 | 1 |
internal genitalia | 8.84e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
endocrine gland cancer | 1.36e-08 | 6 |
tubular adenocarcinoma | 4.17e-07 | 2 |
signet ring cell adenocarcinoma | 5.28e-07 | 2 |