FFCP PHASE1:Hg19::chr22:31489401..31489412,+: Difference between revisions
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|id=chr22:31489401..31489412,+
|short_description=p38@SMTN
|description=CAGE_peak_38_at_SMTN_5end
|association_with_transcript=35bp_to_ENST00000403419_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6525 | |EntrezGene=6525 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11126 | |HGNC=11126 | ||
|TSSclassifier=strong | |||
|UniProt=B5MBZ4 | |UniProt=B5MBZ4 | ||
|association_with_transcript=35bp_to_ENST00000403419_5end | |||
|cluster_id=chr22:31489401..31489412,+ | |||
|coexpression_cluster_id=C163 | |||
|description=CAGE_peak_38_at_SMTN_5end | |||
|id=chr22:31489401..31489412,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000188;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0010226;5.12e-50;1!UBERON:0005062;1.21e-13;4!UBERON:0007284;1.21e-13;4!UBERON:0003104;3.63e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.93e-18!115;UBERON:0000341!9.17e-14!2;UBERON:0003103!1.58e-11!69;UBERON:0004151!4.39e-10!3;UBERON:0003978!5.25e-10!3;UBERON:0009751!5.25e-10!3;UBERON:0000946!5.25e-10!3;UBERON:0002523!5.25e-10!3;UBERON:0005983!5.25e-10!3;UBERON:0002165!5.25e-10!3;UBERON:0002062!5.25e-10!3;UBERON:0007280!5.25e-10!3;UBERON:0001723!8.16e-10!3;UBERON:0001033!8.16e-10!3;UBERON:0010056!8.16e-10!3;UBERON:0007100!1.76e-08!27;UBERON:0002146!3.10e-08!1;UBERON:0005623!3.10e-08!1;UBERON:0002084!3.32e-08!1;UBERON:0002082!3.32e-08!1;UBERON:0004706!3.32e-08!1;UBERON:0002079!3.55e-08!1;UBERON:0002135!4.99e-08!1;UBERON:0007029!5.70e-08!1;UBERON:0001301!6.52e-08!1;UBERON:0000948!7.73e-07!24;UBERON:0005498!7.73e-07!24;UBERON:0004140!7.73e-07!24;UBERON:0009881!7.73e-07!24;UBERON:0004141!7.73e-07!24;UBERON:0003084!7.73e-07!24;UBERON:0007005!7.73e-07!24;UBERON:0004139!7.73e-07!24;UBERON:0004291!7.73e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002084;5.12e-50;1!UBERON:0002146;5.12e-50;1!UBERON:0002082;5.12e-50;1!UBERON:0005623;5.12e-50;1!UBERON:0003978;1.03e-17;3!UBERON:0004151;1.03e-17;3!UBERON:0000946;1.03e-17;3!UBERON:0001134;1.72e-13;16!UBERON:0002036;1.72e-13;16!UBERON:0000948;4.96e-10;22!UBERON:0007100;5.95e-09;25!UBERON:0002385;3.37e-07;31!UBERON:0001015;3.37e-07;31!UBERON:0000383;3.37e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002146,3.99e-50,1;UBERON:0005623,3.99e-50,1;UBERON:0002084,6.58e-50,1;UBERON:0002082,6.58e-50,1;UBERON:0010226,6.58e-50,1;UBERON:0003978,9.46e-18,3;UBERON:0009751,9.46e-18,3;UBERON:0000946,9.46e-18,3;UBERON:0002523,9.46e-18,3;UBERON:0005983,9.46e-18,3;UBERON:0002165,9.46e-18,3;UBERON:0002062,9.46e-18,3;UBERON:0007280,9.46e-18,3;UBERON:0004151,1.12e-17,3;UBERON:0000948,2.78e-09,24;UBERON:0005498,2.78e-09,24;UBERON:0004140,2.78e-09,24;UBERON:0009881,2.78e-09,24;UBERON:0004141,2.78e-09,24;UBERON:0003084,2.78e-09,24;UBERON:0007005,2.78e-09,24;UBERON:0004139,2.78e-09,24;UBERON:0004291,2.78e-09,24;UBERON:0004797,2.18e-08,7;UBERON:0007100,2.30e-08,27 | |||
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|short_description=p38@SMTN | |||
}} | }} |
Latest revision as of 19:25, 19 September 2015
Short description: | p38@SMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_38_at_SMTN_5end |
Coexpression cluster: | C163_Skeletal_skeletal_Pericytes_Hepatic_rhabdomyosarcoma_throat_mesenchymal |
Association with transcript: | 35bp_to_ENST00000403419_5end |
EntrezGene: | SMTN |
HGNC: | 11126 |
UniProt: | B5MBZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
pulmonary valve | 3.99e-50 | 1 |
semi-lunar valve | 3.99e-50 | 1 |
heart left ventricle | 6.58e-50 | 1 |
cardiac ventricle | 6.58e-50 | 1 |
future cardiac ventricle | 6.58e-50 | 1 |
valve | 9.46e-18 | 3 |
cardiac mesenchyme | 9.46e-18 | 3 |
cardial valve | 9.46e-18 | 3 |
tunica intima | 9.46e-18 | 3 |
heart layer | 9.46e-18 | 3 |
endocardium | 9.46e-18 | 3 |
endocardial cushion | 9.46e-18 | 3 |
presumptive endocardium | 9.46e-18 | 3 |
cardiac chamber | 1.12e-17 | 3 |
heart | 2.78e-09 | 24 |
primitive heart tube | 2.78e-09 | 24 |
primary heart field | 2.78e-09 | 24 |
anterior lateral plate mesoderm | 2.78e-09 | 24 |
heart tube | 2.78e-09 | 24 |
heart primordium | 2.78e-09 | 24 |
cardiac mesoderm | 2.78e-09 | 24 |
cardiogenic plate | 2.78e-09 | 24 |
heart rudiment | 2.78e-09 | 24 |
blood vessel layer | 2.18e-08 | 7 |
primary circulatory organ | 2.30e-08 | 27 |