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{{Coexpression_clusters
{
|full_id=C75_Eosinophils_Natural_CD8_Basophils_CD14_CD4_Peripheral
|

Latest revision as of 10:25, 17 September 2013


Full id: C75_Eosinophils_Natural_CD8_Basophils_CD14_CD4_Peripheral



Phase1 CAGE Peaks

Hg19::chr10:11208955..11208966,-p@chr10:11208955..11208966
-
Hg19::chr10:121028416..121028441,-p@chr10:121028416..121028441
-
Hg19::chr10:126406690..126406702,-p@chr10:126406690..126406702
-
Hg19::chr10:15139747..15139782,+p5@RPP38
Hg19::chr10:22291850..22291865,+p@chr10:22291850..22291865
+
Hg19::chr10:3826854..3826861,-p@chr10:3826854..3826861
-
Hg19::chr10:43634395..43634406,-p@chr10:43634395..43634406
-
Hg19::chr11:102187923..102187941,-p@chr11:102187923..102187941
-
Hg19::chr11:30344926..30344961,+p@chr11:30344926..30344961
+
Hg19::chr11:58345474..58345491,-p3@LPXN
Hg19::chr11:62359322..62359334,+p@chr11:62359322..62359334
+
Hg19::chr11:65193698..65193705,-p@chr11:65193698..65193705
-
Hg19::chr11:82611610..82611625,+p@chr11:82611610..82611625
+
Hg19::chr12:10365911..10365915,-p@chr12:10365911..10365915
-
Hg19::chr12:10366003..10366014,-p@chr12:10366003..10366014
-
Hg19::chr12:104323304..104323327,+p@chr12:104323304..104323327
+
Hg19::chr12:106695681..106695697,-p@chr12:106695681..106695697
-
Hg19::chr12:25538587..25538605,+p@chr12:25538587..25538605
+
Hg19::chr12:46122540..46122548,-p@chr12:46122540..46122548
-
Hg19::chr12:49412525..49412539,-p2@PRKAG1
Hg19::chr12:57872183..57872194,-p16@ARHGAP9
Hg19::chr12:6641964..6641975,+p@chr12:6641964..6641975
+
Hg19::chr12:8179456..8179475,+p@chr12:8179456..8179475
+
Hg19::chr12:9913567..9913595,-p2@CD69
Hg19::chr13:50698542..50698555,-p@chr13:50698542..50698555
-
Hg19::chr13:50698573..50698596,-p@chr13:50698573..50698596
-
Hg19::chr14:23388740..23388761,+p2@ENST00000424245
Hg19::chr14:52313371..52313386,-p@chr14:52313371..52313386
-
Hg19::chr14:52313984..52314002,-p@chr14:52313984..52314002
-
Hg19::chr14:52327208..52327225,-p@chr14:52327208..52327225
-
Hg19::chr14:52327712..52327727,+p15@GNG2
Hg19::chr14:52333145..52333155,-p@chr14:52333145..52333155
-
Hg19::chr14:52333334..52333348,+p@chr14:52333334..52333348
+
Hg19::chr14:69262473..69262484,-p@chr14:69262473..69262484
-
Hg19::chr14:74227209..74227225,+p@chr14:74227209..74227225
+
Hg19::chr14:75726033..75726042,+p2@ENST00000555909
Hg19::chr14:75726044..75726086,+p1@ENST00000555909
Hg19::chr14:75741792..75741807,+p@chr14:75741792..75741807
+
Hg19::chr14:75744973..75744991,-p@chr14:75744973..75744991
-
Hg19::chr14:94429517..94429532,-p@chr14:94429517..94429532
-
Hg19::chr15:55582399..55582403,+p@chr15:55582399..55582403
+
Hg19::chr15:75746723..75746749,+p@chr15:75746723..75746749
+
Hg19::chr16:15737233..15737254,+p3@NDE1
Hg19::chr16:15766837..15766840,-p@chr16:15766837..15766840
-
Hg19::chr16:27379190..27379201,+p@chr16:27379190..27379201
+
Hg19::chr16:28835627..28835647,-p@chr16:28835627..28835647
-
Hg19::chr16:85063118..85063124,-p@chr16:85063118..85063124
-
Hg19::chr17:33415837..33415862,-p@chr17:33415837..33415862
-
Hg19::chr17:38374969..38374995,-p@chr17:38374969..38374995
-
Hg19::chr17:38478742..38478783,-p@chr17:38478742..38478783
-
Hg19::chr17:38479445..38479465,+p@chr17:38479445..38479465
+
Hg19::chr17:38480295..38480325,-p@chr17:38480295..38480325
-
Hg19::chr17:38480329..38480352,-p@chr17:38480329..38480352
-
Hg19::chr17:38480488..38480504,+p@chr17:38480488..38480504
+
Hg19::chr17:38482456..38482468,-p@chr17:38482456..38482468
-
Hg19::chr17:56422008..56422024,+p@chr17:56422008..56422024
+
Hg19::chr17:62971940..62971944,-p13@AMZ2P1
Hg19::chr17:62972295..62972313,+p@chr17:62972295..62972313
+
Hg19::chr17:62982601..62982604,-p@chr17:62982601..62982604
-
Hg19::chr17:66243861..66243874,+p7@AMZ2
Hg19::chr17:66508421..66508435,-p@chr17:66508421..66508435
-
Hg19::chr17:74712523..74712551,+p@chr17:74712523..74712551
+
Hg19::chr17:74721485..74721489,-p@chr17:74721485..74721489
-
Hg19::chr17:74721959..74721969,-p5@JMJD6
Hg19::chr17:7738759..7738770,-p@chr17:7738759..7738770
-
Hg19::chr17:7739159..7739197,+p@chr17:7739159..7739197
+
Hg19::chr17:7744830..7744841,-p@chr17:7744830..7744841
-
Hg19::chr17:7746957..7746964,-p@chr17:7746957..7746964
-
Hg19::chr17:7747314..7747325,-p@chr17:7747314..7747325
-
Hg19::chr17:8060155..8060178,+p@chr17:8060155..8060178
+
Hg19::chr17:8857783..8857803,-p@chr17:8857783..8857803
-
Hg19::chr19:10380695..10380713,+p@chr19:10380695..10380713
+
Hg19::chr19:13950145..13950160,+p@chr19:13950145..13950160
+
Hg19::chr19:13950605..13950657,+p@chr19:13950605..13950657
+
Hg19::chr19:13950775..13950788,+p@chr19:13950775..13950788
+
Hg19::chr19:13957681..13957691,+p@chr19:13957681..13957691
+
Hg19::chr19:13957704..13957725,+p@chr19:13957704..13957725
+
Hg19::chr19:13957738..13957749,+p@chr19:13957738..13957749
+
Hg19::chr19:14248044..14248065,+p@chr19:14248044..14248065
+
Hg19::chr19:14493041..14493072,+p@chr19:14493041..14493072
+
Hg19::chr19:16435247..16435259,-p@chr19:16435247..16435259
-
Hg19::chr19:16435475..16435483,-p@chr19:16435475..16435483
-
Hg19::chr19:18058552..18058569,-p@chr19:18058552..18058569
-
Hg19::chr19:18111669..18111677,-p@chr19:18111669..18111677
-
Hg19::chr19:39894786..39894801,+p@chr19:39894786..39894801
+
Hg19::chr19:41857636..41857667,+p@chr19:41857636..41857667
+
Hg19::chr19:45954356..45954397,+p@chr19:45954356..45954397
+
Hg19::chr19:45972508..45972531,-p@chr19:45972508..45972531
-
Hg19::chr19:54369656..54369673,+p16@MYADM
Hg19::chr19:54371876..54371893,-p@chr19:54371876..54371893
-
Hg19::chr19:54372356..54372368,-p3@ENST00000455835
Hg19::chr19:54372480..54372496,-p1@ENST00000455835
Hg19::chr19:54372737..54372755,-p5@ENST00000455835
Hg19::chr19:56146421..56146438,+p13@ZNF580
p4@ZNF581
Hg19::chr19:59085054..59085070,+p@chr19:59085054..59085070
+
Hg19::chr19:59085158..59085163,+p@chr19:59085158..59085163
+
Hg19::chr1:114472866..114472877,+p10@HIPK1
Hg19::chr1:114472905..114472919,+p9@HIPK1
Hg19::chr1:12239142..12239152,-p@chr1:12239142..12239152
-
Hg19::chr1:14027671..14027706,+p@chr1:14027671..14027706
+
Hg19::chr1:151029536..151029568,-p@chr1:151029536..151029568
-
Hg19::chr1:15736115..15736135,+p3@EFHD2
Hg19::chr1:159880335..159880355,-p1@HSPC081
Hg19::chr1:159893511..159893537,-p4@TAGLN2
Hg19::chr1:159893654..159893709,+p@chr1:159893654..159893709
+
Hg19::chr1:159893714..159893728,+p@chr1:159893714..159893728
+
Hg19::chr1:159894581..159894596,+p@chr1:159894581..159894596
+
Hg19::chr1:203296513..203296536,-p@chr1:203296513..203296536
-
Hg19::chr1:204380854..204380865,-p3@PPP1R15B
Hg19::chr1:212769621..212769628,-p@chr1:212769621..212769628
-
Hg19::chr1:2165919..2165932,-p@chr1:2165919..2165932
-
Hg19::chr1:2166007..2166047,+p@chr1:2166007..2166047
+
Hg19::chr1:234747310..234747334,-p@chr1:234747310..234747334
-
Hg19::chr1:234748505..234748539,-p@chr1:234748505..234748539
-
Hg19::chr1:235490580..235490602,+p10@GGPS1
Hg19::chr1:236029492..236029504,+p@chr1:236029492..236029504
+
Hg19::chr1:236029525..236029533,+p@chr1:236029525..236029533
+
Hg19::chr1:236030037..236030051,-p@chr1:236030037..236030051
-
Hg19::chr1:236030103..236030119,-p@chr1:236030103..236030119
-
Hg19::chr1:236040072..236040107,+p@chr1:236040072..236040107
+
Hg19::chr1:245026904..245026918,+p@chr1:245026904..245026918
+
Hg19::chr1:36689679..36689717,-p@chr1:36689679..36689717
-
Hg19::chr20:23331547..23331558,+p3@NXT1
Hg19::chr20:4795070..4795106,+p@chr20:4795070..4795106
+
Hg19::chr20:56882271..56882292,+p@chr20:56882271..56882292
+
Hg19::chr20:62527815..62527818,-p@chr20:62527815..62527818
-
Hg19::chr21:38739768..38739774,-p@chr21:38739768..38739774
-
Hg19::chr21:43640151..43640168,-p@chr21:43640151..43640168
-
Hg19::chr21:43640820..43640830,+p@chr21:43640820..43640830
+
Hg19::chr22:31686994..31687005,+p@chr22:31686994..31687005
+
Hg19::chr22:31687044..31687060,+p@chr22:31687044..31687060
+
Hg19::chr22:36761081..36761108,-p36@MYH9
Hg19::chr22:47131164..47131179,+p@chr22:47131164..47131179
+
Hg19::chr22:47158351..47158356,-p@chr22:47158351..47158356
-
Hg19::chr2:136500212..136500216,-p1@AK056055
Hg19::chr2:136874641..136874658,+p@chr2:136874641..136874658
+
Hg19::chr2:145273256..145273269,-p@chr2:145273256..145273269
-
Hg19::chr2:157190082..157190099,+p@chr2:157190082..157190099
+
Hg19::chr2:178078011..178078032,-p@chr2:178078011..178078032
-
Hg19::chr2:178128711..178128729,+p1@ENST00000428541
Hg19::chr2:178128773..178128788,+p3@ENST00000428541
Hg19::chr2:198299998..198300018,+p@chr2:198299998..198300018
+
Hg19::chr2:198317813..198317851,-p@chr2:198317813..198317851
-
Hg19::chr2:208393865..208393883,+p@chr2:208393865..208393883
+
Hg19::chr2:219433975..219433993,-p@chr2:219433975..219433993
-
Hg19::chr2:238582192..238582211,+p@chr2:238582192..238582211
+
Hg19::chr2:238582238..238582251,+p@chr2:238582238..238582251
+
Hg19::chr2:238583492..238583501,-p@chr2:238583492..238583501
-
Hg19::chr2:238596480..238596487,-p@chr2:238596480..238596487
-
Hg19::chr2:30370686..30370701,-p@chr2:30370686..30370701
-
Hg19::chr2:74685041..74685060,-p@chr2:74685041..74685060
-
Hg19::chr2:7889352..7889371,-p@chr2:7889352..7889371
-
Hg19::chr3:119013024..119013027,+p12@ARHGAP31
Hg19::chr3:150126904..150126958,+p7@TSC22D2
Hg19::chr3:156878100..156878138,+p@chr3:156878100..156878138
+
Hg19::chr3:177077886..177077897,+p@chr3:177077886..177077897
+
Hg19::chr3:177077917..177077934,+p@chr3:177077917..177077934
+
Hg19::chr3:39093904..39093915,-p@chr3:39093904..39093915
-
Hg19::chr3:5018959..5018971,+p@chr3:5018959..5018971
+
Hg19::chr3:5019050..5019076,+p@chr3:5019050..5019076
+
Hg19::chr3:5019230..5019241,+p@chr3:5019230..5019241
+
Hg19::chr3:52719543..52719576,+p12@GNL3
Hg19::chr3:57583545..57583570,+p@chr3:57583545..57583570
+
Hg19::chr4:186346970..186346995,-p@chr4:186346970..186346995
-
Hg19::chr4:26320869..26320880,+p30@RBPJ
Hg19::chr4:26320884..26320897,+p26@RBPJ
Hg19::chr4:54930230..54930236,+p@chr4:54930230..54930236
+
Hg19::chr4:78783292..78783310,+p4@MRPL1
Hg19::chr5:106812720..106812731,-p@chr5:106812720..106812731
-
Hg19::chr5:106812744..106812762,-p@chr5:106812744..106812762
-
Hg19::chr5:107717914..107717949,-p14@FBXL17
Hg19::chr5:108745177..108745194,+p@chr5:108745177..108745194
+
Hg19::chr5:108745198..108745212,+p@chr5:108745198..108745212
+
Hg19::chr5:133984112..133984120,-p@chr5:133984112..133984120
-
Hg19::chr5:142382063..142382078,-p@chr5:142382063..142382078
-
Hg19::chr5:169720333..169720354,-p@chr5:169720333..169720354
-
Hg19::chr5:171434015..171434056,+p@chr5:171434015..171434056
+
Hg19::chr5:171606085..171606099,-p@chr5:171606085..171606099
-
Hg19::chr5:172191555..172191559,-p@chr5:172191555..172191559
-
Hg19::chr5:176854406..176854415,+p@chr5:176854406..176854415
+
Hg19::chr5:179248726..179248764,-p@chr5:179248726..179248764
-
Hg19::chr5:180587568..180587583,-p@chr5:180587568..180587583
-
Hg19::chr5:180587605..180587618,-p@chr5:180587605..180587618
-
Hg19::chr5:39073411..39073429,-p@chr5:39073411..39073429
-
Hg19::chr5:49964040..49964073,+p@chr5:49964040..49964073
+
Hg19::chr5:86708579..86708607,-p4@CCNH
Hg19::chr5:86708610..86708627,-p3@CCNH
Hg19::chr5:98263084..98263098,+p@chr5:98263084..98263098
+
Hg19::chr5:98263147..98263158,+p@chr5:98263147..98263158
+
Hg19::chr6:109330919..109330965,+p2@AF086525
Hg19::chr6:12008838..12008851,-p@chr6:12008838..12008851
-
Hg19::chr6:143268479..143268502,-p@chr6:143268479..143268502
-
Hg19::chr6:144472464..144472478,-p@chr6:144472464..144472478
-
Hg19::chr6:24720572..24720599,+p@chr6:24720572..24720599
+
Hg19::chr6:28105369..28105380,-p3@uc003nkl.1
p3@uc010jqw.1
p5@uc003nkk.1
Hg19::chr6:30544083..30544085,+p@chr6:30544083..30544085
+
Hg19::chr6:33281969..33281982,+p@chr6:33281969..33281982
+
Hg19::chr6:33281983..33281992,+p@chr6:33281983..33281992
+
Hg19::chr6:41041625..41041639,+p@chr6:41041625..41041639
+
Hg19::chr7:104624418..104624476,+p@chr7:104624418..104624476
+
Hg19::chr7:104624577..104624592,-p2@uc003vcj.1
Hg19::chr7:104652906..104652924,-p@chr7:104652906..104652924
-
Hg19::chr7:104652927..104652977,-p@chr7:104652927..104652977
-
Hg19::chr7:104653833..104653859,+p@chr7:104653833..104653859
+
Hg19::chr7:104654708..104654711,+p6@MLL5
Hg19::chr7:106808946..106808961,-p@chr7:106808946..106808961
-
Hg19::chr7:108166913..108166931,+p@chr7:108166913..108166931
+
Hg19::chr7:139025909..139025927,+p4@C7orf55
p7@LUC7L2
Hg19::chr7:140623930..140623946,-p@chr7:140623930..140623946
-
Hg19::chr7:140623950..140623972,-p@chr7:140623950..140623972
-
Hg19::chr7:140624224..140624251,+p@chr7:140624224..140624251
+
Hg19::chr7:155090681..155090698,-p@chr7:155090681..155090698
-
Hg19::chr7:32931882..32931906,+p@chr7:32931882..32931906
+
Hg19::chr7:39989946..39989977,+p6@CDK13
Hg19::chr7:43688635..43688639,+p@chr7:43688635..43688639
+
Hg19::chr7:44085622..44085636,+p@chr7:44085622..44085636
+
Hg19::chr7:44924238..44924257,+p2@BC047792
Hg19::chr7:66119277..66119290,-p@chr7:66119277..66119290
-
Hg19::chr7:98978644..98978675,-p@chr7:98978644..98978675
-
Hg19::chr8:103424565..103424568,+p@chr8:103424565..103424568
+
Hg19::chr8:123793773..123793791,-p@chr8:123793773..123793791
-
Hg19::chr8:123793793..123793848,-p@chr8:123793793..123793848
-
Hg19::chr8:146103749..146103775,-p@chr8:146103749..146103775
-
Hg19::chr8:29939997..29940018,+p@chr8:29939997..29940018
+
Hg19::chr8:29940023..29940034,+p@chr8:29940023..29940034
+
Hg19::chr9:102581971..102581984,+p@chr9:102581971..102581984
+
Hg19::chr9:102582557..102582589,+p@chr9:102582557..102582589
+
Hg19::chr9:102582592..102582608,+p@chr9:102582592..102582608
+
Hg19::chr9:102584935..102584960,-p@chr9:102584935..102584960
-
Hg19::chr9:132176261..132176274,+p@chr9:132176261..132176274
+
Hg19::chr9:132388566..132388581,+p2@METTL11A
Hg19::chr9:132650191..132650215,+p@chr9:132650191..132650215
+
Hg19::chr9:136009131..136009140,-p@chr9:136009131..136009140
-
Hg19::chr9:139797163..139797174,+p@chr9:139797163..139797174
+
Hg19::chr9:88356112..88356128,+p@chr9:88356112..88356128
+
Hg19::chrX:106954324..106954343,-p@chrX:106954324..106954343
-
Hg19::chrX:106954508..106954537,+p@chrX:106954508..106954537
+
Hg19::chrX:15354246..15354257,-p@chrX:15354246..15354257
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
6.83169628775205e-050.0432446375014705384Ribosome biogenesis in eukaryotes (KEGG):03008



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte4.23e-82136
classical monocyte1.59e-7042
CD14-positive, CD16-negative classical monocyte1.59e-7042
myeloid leukocyte7.91e-6572
hematopoietic stem cell8.77e-65168
angioblastic mesenchymal cell8.77e-65168
hematopoietic lineage restricted progenitor cell3.24e-63120
hematopoietic cell3.06e-62177
nongranular leukocyte5.37e-62115
defensive cell3.37e-6048
phagocyte3.37e-6048
hematopoietic oligopotent progenitor cell3.05e-56161
hematopoietic multipotent progenitor cell3.05e-56161
granulocyte monocyte progenitor cell2.29e-5467
macrophage dendritic cell progenitor7.32e-5261
myeloid lineage restricted progenitor cell6.26e-5066
monopoietic cell2.31e-4859
monocyte2.31e-4859
monoblast2.31e-4859
promonocyte2.31e-4859
myeloid cell2.34e-42108
common myeloid progenitor2.34e-42108
stuff accumulating cell5.94e-2887
mesenchymal cell1.96e-20354
connective tissue cell1.17e-19361
intermediate monocyte4.74e-199
CD14-positive, CD16-positive monocyte4.74e-199
motile cell6.16e-17386
granulocyte9.07e-158
CD4-positive, alpha-beta T cell2.40e-146
stem cell4.94e-14441
multi fate stem cell1.26e-13427
mature alpha-beta T cell1.30e-1318
alpha-beta T cell1.30e-1318
immature T cell1.30e-1318
mature T cell1.30e-1318
immature alpha-beta T cell1.30e-1318
somatic stem cell3.59e-13433
blood cell5.78e-1311
lymphoid lineage restricted progenitor cell1.50e-1252
lymphocyte3.28e-1253
common lymphoid progenitor3.28e-1253
nucleate cell1.44e-1155
T cell4.71e-0925
pro-T cell4.71e-0925
natural killer cell1.39e-083
pro-NK cell1.39e-083
basophil3.35e-083
single nucleate cell9.22e-083
mononuclear cell9.22e-083
naive T cell1.08e-073
plasmacytoid dendritic cell9.44e-073
Uber Anatomy
Ontology termp-valuen
bone marrow7.99e-4976
hematopoietic system6.99e-4798
blood island6.99e-4798
bone element2.63e-4482
immune system1.84e-4193
hemolymphoid system3.35e-41108
skeletal element3.24e-3990
skeletal system5.31e-34100
connective tissue1.33e-18371
lateral plate mesoderm2.40e-15203
musculoskeletal system2.48e-15167


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.13.22396
MA0004.10.286202
MA0006.11.90312
MA0007.10.156213
MA0009.11.03136
MA0014.12.46433
MA0017.10.00258317
MA0019.10.12542
MA0024.10.887943
MA0025.10.524251
MA0027.12.44223
MA0028.11.1757
MA0029.10.473243
MA0030.13.26925
MA0031.12.21154
MA0038.10.202944
MA0040.10.303007
MA0041.10.0184909
MA0042.10.335076
MA0043.10.473659
MA0046.10.124363
MA0048.10.65466
MA0050.11.0866
MA0051.10.924821
MA0052.10.1697
MA0055.10.0986645
MA0056.10
MA0057.10.891455
MA0058.10.0644749
MA0059.10.142778
MA0060.11.49679
MA0061.122.2157
MA0063.10
MA0066.11.17981
MA0067.10.980022
MA0068.11.76643
MA0069.10.252141
MA0070.10.0391334
MA0071.10.0411898
MA0072.10.00710069
MA0073.17.01739
MA0074.10.409083
MA0076.11.83579
MA0077.10.218353
MA0078.11.37119
MA0081.11.02107
MA0083.12.27312
MA0084.10.500815
MA0087.10.106446
MA0088.11.44847
MA0089.10
MA0090.10.815355
MA0091.10.013367
MA0092.10.584957
MA0093.10.131844
MA0095.10
MA0098.10
MA0100.11.04661
MA0101.115.6548
MA0103.10.00933539
MA0105.112.208
MA0106.10.199117
MA0107.117.9566
MA0108.20.165453
MA0109.10
MA0111.10.204462
MA0113.10.0155879
MA0114.10.0262225
MA0115.10.202049
MA0116.10.793327
MA0117.11.58227
MA0119.10.0443134
MA0122.10.076845
MA0124.10.378948
MA0125.10.106527
MA0130.10
MA0131.11.82188
MA0132.10
MA0133.10
MA0135.10.16251
MA0136.10.454756
MA0139.10.120018
MA0140.10.696395
MA0141.10.351261
MA0142.10.0237327
MA0143.10.0387418
MA0144.10.648391
MA0145.10.605672
MA0146.12.49187
MA0147.10.713194
MA0148.10.188445
MA0149.10.000483981
MA0062.23.93111
MA0035.20.692353
MA0039.23.48306
MA0138.20.208956
MA0002.20.993779
MA0137.20.334052
MA0104.21.04786
MA0047.20.104431
MA0112.20.477263
MA0065.20.190508
MA0150.11.29411
MA0151.10
MA0152.10.0209749
MA0153.10.0962703
MA0154.10.651093
MA0155.10.542652
MA0156.10.948922
MA0157.10.301647
MA0158.10
MA0159.10.417589
MA0160.10.924367
MA0161.10
MA0162.13.93315
MA0163.10.19514
MA0164.10.26164
MA0080.21.02058
MA0018.24.02365
MA0099.20.308041
MA0079.210.3241
MA0102.20.551775
MA0258.10.873473
MA0259.11.39985
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
ATF3#467272.548343328580829.51208162015812e-060.000252717449078528
BATF#10538343.479685970329093.19429701252526e-103.2139613265041e-08
BCL11A#53335475.602371386006448.46810614496016e-222.32736983598288e-19
BCL3#602446.386859341867591.38259004291854e-223.94525468558387e-20
BCLAF1#9774242.183460263205560.0003141696640944540.00323043866775236
BHLHE40#8553122.262444380519870.007687106242665910.0316574798453385
BRCA1#672363.053076904017042.9225362610217e-092.45754238780069e-07
CCNT2#905942.502533395943221.18087893923067e-182.74066256742914e-16
CEBPB#1051662.21048631640522.84883517768062e-102.89425580857769e-08
CHD2#1106703.042359657093191.0470261680827e-172.25000753021376e-15
CTBP2#1488133.425718505929690.0001384796888499080.00180851322043211
CTCF#10664681.531501820878580.0001290731376028270.00171526522688658
E2F1#1869972.000070394299566.3522457590317e-139.1759639671855e-11
E2F4#1874371.969404334729096.06132888394657e-050.000994875259013823
E2F6#1876972.04480716796071.60416810763934e-132.45656470665316e-11
EBF1#18791003.742212960743288.94743498663488e-344.17170161861232e-31
EGR1#19581272.66175943294495.773326609236e-302.31019332468199e-27
ELF1#19971472.630001680439952.78750345720923e-361.43410873678559e-33
ELK4#2005412.796903142845332.52033438299484e-092.1278997787033e-07
EP300#2033942.67542236245791.2050754047878e-203.14642175501581e-18
ESR1#2099212.71487676142544.02594400921874e-050.000738436189636102
ETS1#2113522.125611630061011.34385543635067e-077.65272180572668e-06
FOS#2353702.646457443792471.29619278171863e-142.22653088700513e-12
FOSL1#8061172.836684265455220.0001325343597656760.00174153950673974
FOSL2#2355382.703141272997242.58286662292781e-081.79356387787206e-06
FOXA1#3169612.84019581811985.38956527973375e-148.72683423643586e-12
FOXA2#3170303.10468030495784.86678344148894e-083.1492069135419e-06
GABPB1#2553842.49447664806432.66908122667861e-165.23977771114826e-14
GATA1#2623522.962756401166481.30025880979469e-121.80342270698736e-10
GATA2#2624311.660054133362070.00386365866143180.0190544764103166
GATA3#2625192.174343742802160.001397023995983430.00909057876115348
GTF2B#2959192.550137683832610.0002088211185639120.00243214774190882
GTF2F1#2962361.927007527576790.0001189959546965830.00161568103387369
HDAC2#3066372.085621633425091.80530930199864e-050.000411220715793754
HEY1#234621171.986105008585584.05012303428591e-167.89161939510796e-14
HMGN3#9324742.54290979633591.32371244219662e-142.2663476024684e-12
HNF4G#3174182.174628594437150.001855219515586890.0109448834089352
IRF1#3659652.085780016729644.31593082279074e-093.52424940736077e-07
IRF3#3661112.171434766077250.01385997509705460.0487463188806628
IRF4#3662363.314800238331043.34321486752837e-103.36055839797685e-08
JUN#3725522.733895453787772.55593740006293e-113.01626605791156e-09
JUNB#3726293.729867004768121.56896950038446e-091.38279835992112e-07
JUND#3727681.998475411963159.46056406362997e-097.21205730103249e-07
MAX#4149932.521376732511191.22433452170818e-182.82894409541329e-16
MEF2A#4205473.701394339299467.61943467234818e-151.32627689624229e-12
MEF2C#4208284.860159352073428.29234177656483e-121.04342636482248e-09
MXI1#4601723.013584694414585.00537449900914e-181.10519303869348e-15
MYC#4609952.084524276482751.05090881016951e-131.64059589275476e-11
NFE2#477882.595101198374090.01312564358035360.0465445161581065
NFKB1#47901433.297449872519831.60497834339093e-461.05422851072582e-43
NFYA#4800282.167715376450650.0001101346059120010.00153099269357693
NFYB#4801322.253417580307421.61674496988943e-050.00037381276933868
NR3C1#2908362.264827058496764.00309224580791e-060.000129356111095276
NRF1#4899402.052147806337971.14090479994695e-050.000291047768445674
PAX5#50791143.194665842665014.04972610664319e-331.83891019500743e-30
PBX3#5090494.511811435506147.54137959948611e-191.77390572970885e-16
POLR2A#54302181.966994926427149.27805069476543e-506.82387560922962e-47
POU2F2#5452953.634797418006478.33401639558418e-313.42675723755282e-28
POU5F1#546045.637633637847150.005885481992598030.0264023819348372
PRDM1#63984.431292631175150.0005265826918707070.00455904582245584
RAD21#5885371.609816193831450.002673334871929370.0147389759113885
RFX5#5993552.784181073511472.87649191062555e-123.83675528293515e-10
RXRA#6256383.205190971794392.59523186831108e-102.64690840912637e-08
SIN3A#259421312.977159240389842.12231021559628e-361.10274605276945e-33
SMARCB1#6598413.144375407678388.12321878611607e-118.90221245333868e-09
SMARCC1#6599152.751892394094420.0004492960999640440.00417994257831327
SMC3#9126332.086062117154555.38538125805291e-050.000913354714533595
SP1#66671102.633705678972681.94160877300782e-246.05312473564667e-22
SP2#6668192.087886888164070.002199542509121680.0126747969603928
SPI1#6688893.068003328817322.31740644593553e-236.95481643123737e-21
SREBF1#6720163.160057105242916.13756268894141e-050.00100612291582225
SRF#6722492.840595524563962.93020137546429e-113.41167560147285e-09
STAT1#6772262.26206418036630.000100556005812050.00141497826610142
STAT2#6773123.290610311921380.000356860764709750.00356891519731127
STAT3#6774632.784564263952594.45548649866383e-147.27072741303049e-12
TAF1#68721542.163147596658721.70369662082267e-286.28736294636391e-26
TAF7#6879361.72937184276160.0009034955483600290.00658112509242384
TBP#69081552.41407334663841.23733402194197e-345.9826818480369e-32
TCF12#6938823.663975302433982.91301923408745e-269.78240565237488e-24
TCF7L2#6934562.534159191326436.68623085532168e-117.38945253226392e-09
TFAP2A#7020281.943368749769990.0006336731050226480.00520080042557645
TFAP2C#7022532.407097127405851.52937598858826e-091.3524682376983e-07
USF1#7391772.058132119096691.48164129397133e-101.56779265553264e-08
USF2#7392351.910617262510230.0001759680428160470.00213995417136296
WRNIP1#5689773.229998951452240.006579764842800250.0281137364651317
YY1#7528901.85716540960864.44531929018325e-104.33892244249952e-08
ZBTB7A#51341822.533010769940432.99748112731943e-165.8734321098708e-14
ZEB1#6935503.547989919652074.58067211392096e-158.0810948463816e-13
ZNF263#10127541.865459867220914.21278743626431e-060.000133529379986649



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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