FFCP PHASE1:Hg19::chr2:10263360..10263373,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:10263360..10263373,+
|short_description=p6@RRM2
|description=CAGE_peak_6_at_RRM2_5end
|association_with_transcript=62bp_to_ENST00000474701_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6241 | |EntrezGene=6241 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10452 | |HGNC=10452 | ||
|TSSclassifier=strong | |||
|UniProt=C9JXC1 | |UniProt=C9JXC1 | ||
|association_with_transcript=62bp_to_ENST00000474701_5end | |||
|cluster_id=chr2:10263360..10263373,+ | |||
|coexpression_cluster_id=C4112 | |||
|description=CAGE_peak_6_at_RRM2_5end | |||
|id=chr2:10263360..10263373,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002127;4.25e-08;1!CL:0000911;4.25e-08;1!CL:0000222;4.25e-08;1!CL:1001319;4.25e-08;1!CL:1000600;4.25e-08;1!CL:0000814;4.25e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.89e-08,1;CL:1000600,2.89e-08,1;CL:0002127,5.43e-08,1;CL:0000914,5.43e-08,1;CL:0000911,5.43e-08,1;CL:0000814,5.43e-08,1;CL:0002042,5.43e-08,1;CL:0002039,5.43e-08,1;CL:0002040,5.43e-08,1;CL:0002041,5.43e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.08e-17;29 | |||
|ontology_enrichment_disease=DOID:14566!8.04e-20!239;DOID:162!1.60e-19!235;DOID:0050687!5.19e-15!143;DOID:305!4.44e-14!106;DOID:0050686!3.32e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.38e-14,106;DOID:0050687,8.54e-11,143;DOID:162,5.07e-09,235;DOID:14566,9.47e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0001557!2.27e-11!19;UBERON:0001737!7.52e-11!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.32e-47;9!UBERON:0001557;5.32e-47;9!UBERON:0000072;4.09e-13;37!UBERON:0000065;3.90e-11;44!UBERON:0004645;4.25e-08;1!UBERON:0001256;4.25e-08;1!UBERON:0001259;4.25e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.20e-47,9;UBERON:0001557,1.31e-27,19;UBERON:0008947,2.85e-13,38;UBERON:0003258,2.85e-13,38;UBERON:0000072,6.62e-13,47;UBERON:0000065,5.11e-11,54;UBERON:0004645,2.89e-08,1;UBERON:0001256,2.89e-08,1;UBERON:0001259,2.89e-08,1;UBERON:0001041,1.21e-07,87;UBERON:0001004,1.35e-07,74 | |||
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| ||
|short_description=p6@RRM2 | |||
}} | }} |
Latest revision as of 01:14, 16 September 2015
Short description: | p6@RRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RRM2_5end |
Coexpression cluster: | C4112_carcinosarcoma_merkel_small_signet_retinoblastoma_carcinoid_mesenchymal |
Association with transcript: | 62bp_to_ENST00000474701_5end |
EntrezGene: | RRM2 |
HGNC: | 10452 |
UniProt: | C9JXC1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.89e-08 | 1 |
lower urinary tract cell | 2.89e-08 | 1 |
innate effector T cell | 5.43e-08 | 1 |
immature NK T cell | 5.43e-08 | 1 |
effector T cell | 5.43e-08 | 1 |
mature NK T cell | 5.43e-08 | 1 |
immature NK T cell stage IV | 5.43e-08 | 1 |
immature NK T cell stage I | 5.43e-08 | 1 |
immature NK T cell stage II | 5.43e-08 | 1 |
immature NK T cell stage III | 5.43e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.20e-47 | 9 |
upper respiratory tract | 1.31e-27 | 19 |
respiratory primordium | 2.85e-13 | 38 |
endoderm of foregut | 2.85e-13 | 38 |
segment of respiratory tract | 6.62e-13 | 47 |
respiratory tract | 5.11e-11 | 54 |
urinary bladder urothelium | 2.89e-08 | 1 |
wall of urinary bladder | 2.89e-08 | 1 |
mucosa of urinary bladder | 2.89e-08 | 1 |
foregut | 1.21e-07 | 87 |
respiratory system | 1.35e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.38e-14 | 106 |
cell type cancer | 8.54e-11 | 143 |
cancer | 5.07e-09 | 235 |
disease of cellular proliferation | 9.47e-09 | 239 |