FFCP PHASE1:Hg19::chr2:242576460..242576600,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:242576460..242576600,-
|short_description=p1@THAP4
|description=CAGE_peak_1_at_THAP4_5end
|association_with_transcript=54bp_to_uc002wbt.2_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51078 | |EntrezGene=51078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23187 | |HGNC=23187 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=54bp_to_uc002wbt.2_5end | |||
|cluster_id=chr2:242576460..242576600,- | |||
|description=CAGE_peak_1_at_THAP4_5end | |||
|id=chr2:242576460..242576600,- | |||
|ontology_enrichment_celltype=CL:0002321!3.45e-19!248;CL:0000220!1.82e-18!246;CL:0000066!8.25e-15!254;CL:0000222!3.87e-08!119;CL:1000449!1.71e-07!16;CL:0000221!7.27e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.87e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.17e-19,250;CL:0000066,1.07e-14,253;CL:0000222,1.69e-08,121;CL:1000449,1.60e-07,15;CL:0000221,5.46e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.47e-16!312;UBERON:0000483!6.53e-16!309;UBERON:0000481!3.67e-14!347;UBERON:0002100!1.26e-12!216;UBERON:0003104!3.04e-12!238;UBERON:0009142!3.04e-12!238;UBERON:0000475!3.98e-12!365;UBERON:0005177!7.65e-11!107;UBERON:0005256!2.88e-10!143;UBERON:0003914!6.60e-10!118;UBERON:0009569!2.16e-09!113;UBERON:0000025!1.38e-08!194;UBERON:0003103!3.66e-08!69;UBERON:0004111!4.78e-08!241;UBERON:0002113!1.14e-07!27;UBERON:0003918!1.14e-07!27;UBERON:0005095!1.14e-07!27;UBERON:0007687!1.14e-07!27;UBERON:0004211!1.71e-07!16;UBERON:0001285!1.71e-07!16;UBERON:0007684!1.71e-07!16;UBERON:0003220!1.71e-07!16;UBERON:0004208!1.71e-07!16;UBERON:0005172!1.82e-07!55;UBERON:0005173!1.82e-07!55;UBERON:0001008!1.84e-07!45;UBERON:0006555!2.40e-07!17;UBERON:0005103!2.40e-07!17;UBERON:0000083!2.40e-07!17;UBERON:0009201!2.40e-07!17;UBERON:0004819!2.40e-07!17;UBERON:0006553!2.40e-07!17;UBERON:0003074!2.40e-07!17;UBERON:0003060!2.40e-07!17;UBERON:0000489!2.46e-07!32;UBERON:0000080!2.72e-07!18;UBERON:0002120!2.72e-07!18;UBERON:0004875!2.72e-07!18;UBERON:0005721!2.72e-07!18;UBERON:0005754!2.72e-07!18;UBERON:0007297!2.72e-07!18;UBERON:0006554!3.29e-07!44;UBERON:0000490!3.52e-07!138;UBERON:0000466!4.14e-07!126;UBERON:0000477!4.22e-07!286;UBERON:0004876!6.65e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.50e-09;30!UBERON:0001008;3.50e-09;30!UBERON:0002113;1.28e-07;24!UBERON:0011143;1.28e-07;24!UBERON:0006555;1.87e-07;15!UBERON:0004819;1.87e-07;15!UBERON:0001285;1.87e-07;15!UBERON:0007684;1.87e-07;15!UBERON:0000489;3.15e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.47e-15,309;UBERON:0000483,6.22e-15,306;UBERON:0002100,1.59e-13,199;UBERON:0003104,3.70e-13,160;UBERON:0009142,3.70e-13,160;UBERON:0005177,1.66e-10,101;UBERON:0003914,8.23e-10,117;UBERON:0005256,1.82e-09,122;UBERON:0009569,2.91e-09,112;UBERON:0000490,8.17e-09,148;UBERON:0000025,2.99e-08,192;UBERON:0003103,4.49e-08,68;UBERON:0007503,5.36e-08,78;UBERON:0004111,7.83e-08,240;UBERON:0002113,1.27e-07,26;UBERON:0003918,1.27e-07,26;UBERON:0011143,1.27e-07,26;UBERON:0005095,1.27e-07,26;UBERON:0007687,1.27e-07,26;UBERON:0004211,1.60e-07,15;UBERON:0009773,1.60e-07,15;UBERON:0001231,1.60e-07,15;UBERON:0001285,1.60e-07,15;UBERON:0007684,1.60e-07,15;UBERON:0004208,1.60e-07,15;UBERON:0001008,2.04e-07,48;UBERON:0005172,2.21e-07,54;UBERON:0005173,2.21e-07,54;UBERON:0006555,2.33e-07,16;UBERON:0004819,2.33e-07,16;UBERON:0000489,2.86e-07,31;UBERON:0006554,3.61e-07,47;UBERON:0000486,8.80e-07,83 | |||
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| ||
|short_description=p1@THAP4 | |||
}} | }} |
Latest revision as of 11:00, 16 September 2015
Short description: | p1@THAP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_THAP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 54bp_to_uc002wbt.2_5end |
EntrezGene: | THAP4 |
HGNC: | 23187 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.17e-19 | 250 |
epithelial cell | 1.07e-14 | 253 |
mesodermal cell | 1.69e-08 | 121 |
epithelial cell of nephron | 1.60e-07 | 15 |
ectodermal cell | 5.46e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.47e-15 | 309 |
epithelium | 6.22e-15 | 306 |
trunk | 1.59e-13 | 199 |
mesenchyme | 3.70e-13 | 160 |
entire embryonic mesenchyme | 3.70e-13 | 160 |
trunk region element | 1.66e-10 | 101 |
epithelial tube | 8.23e-10 | 117 |
trunk mesenchyme | 1.82e-09 | 122 |
subdivision of trunk | 2.91e-09 | 112 |
unilaminar epithelium | 8.17e-09 | 148 |
tube | 2.99e-08 | 192 |
compound organ | 4.49e-08 | 68 |
epithelial vesicle | 5.36e-08 | 78 |
anatomical conduit | 7.83e-08 | 240 |
kidney | 1.27e-07 | 26 |
kidney mesenchyme | 1.27e-07 | 26 |
upper urinary tract | 1.27e-07 | 26 |
kidney rudiment | 1.27e-07 | 26 |
kidney field | 1.27e-07 | 26 |
nephron epithelium | 1.60e-07 | 15 |
renal tubule | 1.60e-07 | 15 |
nephron tubule | 1.60e-07 | 15 |
nephron | 1.60e-07 | 15 |
uriniferous tubule | 1.60e-07 | 15 |
nephrogenic mesenchyme | 1.60e-07 | 15 |
renal system | 2.04e-07 | 48 |
abdomen element | 2.21e-07 | 54 |
abdominal segment element | 2.21e-07 | 54 |
excretory tube | 2.33e-07 | 16 |
kidney epithelium | 2.33e-07 | 16 |
cavitated compound organ | 2.86e-07 | 31 |
urinary system structure | 3.61e-07 | 47 |
multilaminar epithelium | 8.80e-07 | 83 |