FFCP PHASE1:Hg19::chr2:47596394..47596400,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:47596394..47596400,+
|short_description=p6@EPCAM
|description=CAGE_peak_6_at_EPCAM_5end
|association_with_transcript=107bp_to_ENST00000263735,NM_002354,uc0...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4072 | |EntrezGene=4072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11529 | |HGNC=11529 | ||
|TSSclassifier=strong | |||
|UniProt=P16422 | |UniProt=P16422 | ||
|association_with_transcript=107bp_to_ENST00000263735,NM_002354,uc002rvx.2_5end | |||
|cluster_id=chr2:47596394..47596400,+ | |||
|coexpression_cluster_id=C4235 | |||
|description=CAGE_peak_6_at_EPCAM_5end | |||
|id=chr2:47596394..47596400,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.54e-28!254;CL:0000223!1.58e-15!59;CL:0002076!5.78e-13!43;CL:0000082!6.38e-10!19;CL:0000039!7.09e-10!7;CL:0000586!7.09e-10!7;CL:0002251!3.18e-07!21;CL:0002322!4.72e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.13e-16;7!CL:0000586;1.13e-16;7!CL:0002322;7.31e-12;5!CL:1000507;2.73e-11;10!CL:1000494;2.73e-11;10!CL:1000449;3.71e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.08e-22,253;CL:0000039,4.46e-17,7;CL:0000586,4.46e-17,7;CL:0002322,8.08e-12,5;CL:1000507,4.86e-11,10;CL:1000494,4.86e-11,10;CL:0000223,1.18e-10,58;CL:0002076,3.29e-07,42;CL:1000449,5.33e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.48e-11;30!UBERON:0009117;8.22e-08;10!UBERON:0005564;8.22e-08;10 | |||
|ontology_enrichment_disease=DOID:305!1.88e-39!106;DOID:0050687!5.64e-30!143;DOID:162!2.28e-16!235;DOID:14566!1.61e-15!239;DOID:299!7.08e-13!25;DOID:1749!1.17e-09!14;DOID:0050615!6.79e-08!16;DOID:3119!4.96e-07!14;DOID:1324!6.45e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:299;6.52e-14;25!DOID:305;1.25e-13;106!DOID:1749;2.98e-12;14!DOID:7;5.21e-08;39!DOID:0050687;1.57e-07;143!DOID:0050615;4.03e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.15e-41,106;DOID:0050687,6.78e-34,143;DOID:162,6.19e-18,235;DOID:14566,2.85e-17,239;DOID:299,5.35e-14,25;DOID:1749,3.19e-12,14;DOID:7,3.11e-09,39;DOID:0050615,5.69e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.51e-19!169;UBERON:0000925!4.51e-19!169;UBERON:0006595!4.51e-19!169;UBERON:0001007!9.34e-19!155;UBERON:0001555!9.34e-19!155;UBERON:0007026!9.34e-19!155;UBERON:0005911!5.01e-16!82;UBERON:0004921!2.18e-15!129;UBERON:0004185!2.18e-15!129;UBERON:0000466!2.22e-15!126;UBERON:0000464!8.83e-14!104;UBERON:0005153!1.47e-12!37;UBERON:0000077!4.07e-12!130;UBERON:0005177!4.13e-12!107;UBERON:0002048!7.10e-11!22;UBERON:0000117!7.10e-11!22;UBERON:0000171!7.10e-11!22;UBERON:0000170!7.10e-11!22;UBERON:0005597!7.10e-11!22;UBERON:0000118!7.10e-11!22;UBERON:0004802!6.38e-10!19;UBERON:0000115!6.38e-10!19;UBERON:0000160!6.50e-09!27;UBERON:0000344!6.53e-09!12;UBERON:0005409!7.04e-09!35;UBERON:0004807!2.87e-08!28;UBERON:0009569!3.38e-08!113;UBERON:0005178!5.14e-08!34;UBERON:0002224!5.14e-08!34;UBERON:0005157!5.58e-08!51;UBERON:0003929!7.57e-08!54;UBERON:0001004!1.01e-07!72;UBERON:0005181!1.22e-07!35;UBERON:0001041!1.50e-07!98;UBERON:0002294!2.49e-07!7;UBERON:0001173!2.49e-07!7;UBERON:0004912!2.49e-07!7;UBERON:0002553!2.87e-07!70;UBERON:0006554!6.54e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.73e-11;10!UBERON:0009773;2.73e-11;10!UBERON:0001231;2.73e-11;10!UBERON:0004810;2.73e-11;10!UBERON:0002294;2.22e-09;7!UBERON:0001173;2.22e-09;7!UBERON:0006555;3.71e-07;15!UBERON:0004819;3.71e-07;15!UBERON:0001285;3.71e-07;15!UBERON:0007684;3.71e-07;15!UBERON:0002423;7.22e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,2.26e-12,82;UBERON:0004810,4.86e-11,10;UBERON:0001007,1.42e-10,145;UBERON:0001555,1.42e-10,145;UBERON:0007026,1.42e-10,145;UBERON:0005177,1.63e-09,101;UBERON:0004921,5.46e-09,118;UBERON:0004119,8.15e-09,160;UBERON:0000925,8.15e-09,160;UBERON:0006595,8.15e-09,160;UBERON:0003929,5.11e-08,54;UBERON:0002294,3.07e-07,9;UBERON:0001173,3.07e-07,9;UBERON:0004912,3.07e-07,9;UBERON:0004211,5.33e-07,15;UBERON:0009773,5.33e-07,15;UBERON:0001231,5.33e-07,15;UBERON:0001285,5.33e-07,15;UBERON:0007684,5.33e-07,15;UBERON:0004208,5.33e-07,15;UBERON:0005153,6.62e-07,37;UBERON:0009497,7.37e-07,25;UBERON:0000015,7.37e-07,25;UBERON:0002423,7.37e-07,25;UBERON:0006235,7.37e-07,25;UBERON:0004161,7.37e-07,25;UBERON:0005172,9.17e-07,54;UBERON:0005173,9.17e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,1.70763188581434,1.19276791489337,1.74290914304278,1.34759371519982,2.52320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0,0,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0.368323955743585,0,0,0,1.35359883872224,2.69553679865452,3.13739907670742,0,2.00548094896464,0,0,0,0,0,1.00337954770971,1.52925763827023,0.831076008928724,1.34324852833307,0,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.376575203107117,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,4.28285671352269,0,0,0,3.05552393900911,1.9692329214317,0,0.0986434056369336,0,0,0,0,0,0.520855522170466,1.31189999994294,0,1.82069517256799,2.2882828526349,0.709163045303809,0.689486746482929,0,0,0,0,0,0,0,0,0,0.557694977114413,0.153900517007594,0,2.76676685265672,2.42345639906385,4.34589487688032,0,0.183195186803725,0,0,0.156980256395025,0,0.902382642468723,0.784250137270958,0.503464760927528,0,0.317873157960757,0.421996129056054,2.93819054686466,5.79547592879157,0.216388639742091,0.995261931078505,0.707660516026713,4.27721101453538,0,0,0,0.067401132980677,0,0,0,0.782658475728359,0,0,2.41981432097328,0,0,0.60129367765797,0.207376382794494,0,0,0,0,6.54601955868523,0,2.2562765983567,1.17590876897253,1.82824333818845,0.34945333648406,0,0.0967563312890851,0,0,0,0,0,0,0,0,2.15106521008283,6.01191151886503,0.85381197895741,0,1.29681375438695,0,0.171594997861965,1.58460277786965,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,1.99679000498991,0,0,0,0,1.16495949527454,2.91497774536727,3.13180261848433,3.43758073656343,0.196854963029498,0,0,0,1.12527203925513,2.61324929534744,4.15440338029185,0.674921674654501,0,0,0.335434687599266,1.41850273138557,1.41627387964495,0.316801009558219,0,0.959575986597226,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0,0,0,1.40963004463334,0.747511887973863,0,1.24271716604159,0,0,0,0,0,0,0,0,2.04170325125305,0,0,0,0,0,0,0,0,0,0,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0.491545817507439,1.47918486351039,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,9.60684897942564,0,0,0.192687675289379,0,0,0,0,0,0,0,1.17777262201231,2.71330363699803,0,1.61735932610474,0,0,0,0,0,0.781514011233092,1.30953347240711,0,2.06998520703863,0,0,0,0,0,0.548257766857182,0,0,4.47168496738583,0.535701835878287,0,0,1.36597314810779,0,0,0,0,0,1.89110145414349,1.11231401892069,0.156986185701028,0,1.12108865325516,0.913158720509496,0,0,0,0,0.116241425368125,0,0,0,0,0,0.860454717640555,0,0,0,0,0.31020638566432,0,1.78968690876468,1.47225350422864,1.95068679971631,0,0,0,0,3.04121302500737,1.19370465096821,0,3.3883824611688,0.109940516745429,5.1327366812669,2.62392137567012,0.874238242015829,0.470317296361523,0,1.41405928260976,0,0,0,0,0,0,0,1.78553938605658,0.705789743431384,1.04313776695919,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0.109265571963696,0.126698501011437,1.93778776509765,1.87052183685892,1.19463369395298,1.75495277504663,0.227336094654718,0.267964130156178,0,0,0,1.90451545170992,0,0,0.112131862580613,1.33659032384146,1.21270313374932,0,0,0.0673520530145875,0.645499848534087,0.332660356546013,1.38385556638657,0,0,1.16772762738563,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.286804595389004,1.70763188581434,1.19276791489337,1.74290914304278,1.34759371519982,2.52320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0,0,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0.368323955743585,0,0,0,1.35359883872224,2.69553679865452,3.13739907670742,0,2.00548094896464,0,0,0,0,0,1.00337954770971,1.52925763827023,0.831076008928724,1.34324852833307,0,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.376575203107117,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,4.28285671352269,0,0,0,3.05552393900911,1.9692329214317,0,0.0986434056369336,0,0,0,0,0,0.520855522170466,1.31189999994294,0,1.82069517256799,2.2882828526349,0.709163045303809,0.689486746482929,0,0,0,0,0,0,0,0,0,0.557694977114413,0.153900517007594,0,2.76676685265672,2.42345639906385,4.34589487688032,0,0.183195186803725,0,0,0.156980256395025,0,0.902382642468723,0.784250137270958,0.503464760927528,0,0.317873157960757,0.421996129056054,2.93819054686466,5.79547592879157,0.216388639742091,0.995261931078505,0.707660516026713,4.27721101453538,0,0,0,0.067401132980677,0,0,0,0.782658475728359,0,0,2.41981432097328,0,0,0.60129367765797,0.207376382794494,0,0,0,0,6.54601955868523,0,2.2562765983567,1.17590876897253,1.82824333818845,0.34945333648406,0,0.0967563312890851,0,0,0,0,0,0,0,0,2.15106521008283,6.01191151886503,0.85381197895741,0,1.29681375438695,0,0.171594997861965,1.58460277786965,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,1.99679000498991,0,0,0,0,1.16495949527454,2.91497774536727,3.13180261848433,3.43758073656343,0.196854963029498,0,0,0,1.12527203925513,2.61324929534744,4.15440338029185,0.674921674654501,0,0,0.335434687599266,1.41850273138557,1.41627387964495,0.316801009558219,0,0.959575986597226,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0,0,0,1.40963004463334,0.747511887973863,0,1.24271716604159,0,0,0,0,0,0,0,0,2.04170325125305,0,0,0,0,0,0,0,0,0,0,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0.491545817507439,1.47918486351039,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,9.60684897942564,0,0,0.192687675289379,0,0,0,0,0,0,0,1.17777262201231,2.71330363699803,0,1.61735932610474,0,0,0,0,0,0.781514011233092,1.30953347240711,0,2.06998520703863,0,0,0,0,0,0.548257766857182,0,0,4.47168496738583,0.535701835878287,0,0,1.36597314810779,0,0,0,0,0,1.89110145414349,1.11231401892069,0.156986185701028,0,1.12108865325516,0.913158720509496,0,0,0,0,0.116241425368125,0,0,0,0,0,0.860454717640555,0,0,0,0,0.31020638566432,0,1.78968690876468,1.47225350422864,1.95068679971631,0,0,0,0,3.04121302500737,1.19370465096821,0,3.3883824611688,0.109940516745429,5.1327366812669,2.62392137567012,0.874238242015829,0.470317296361523,0,1.41405928260976,0,0,0,0,0,0,0,1.78553938605658,0.705789743431384,1.04313776695919,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0.109265571963696,0.126698501011437,1.93778776509765,1.87052183685892,1.19463369395298,1.75495277504663,0.227336094654718,0.267964130156178,0,0,0,1.90451545170992,0,0,0.112131862580613,1.33659032384146,1.21270313374932,0,0,0.0673520530145875,0.645499848534087,0.332660356546013,1.38385556638657,0,0,1.16772762738563,0,0,0.406896178315738,0,0,0 | ||
|short_description=p6@EPCAM | |||
}} | }} |
Latest revision as of 12:06, 17 September 2015
Short description: | p6@EPCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_EPCAM_5end |
Coexpression cluster: | C4235_nonsmall_endometrial_colon_small_tubular_argyrophil_Prostate |
Association with transcript: | 107bp_to_ENST00000263735, NM_002354, uc002rvx.2_5end |
EntrezGene: | EPCAM |
HGNC: | 11529 |
UniProt: | P16422 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.08e-22 | 253 |
germ line cell | 4.46e-17 | 7 |
germ cell | 4.46e-17 | 7 |
embryonic stem cell | 8.08e-12 | 5 |
kidney tubule cell | 4.86e-11 | 10 |
nephron tubule epithelial cell | 4.86e-11 | 10 |
endodermal cell | 1.18e-10 | 58 |
endo-epithelial cell | 3.29e-07 | 42 |
epithelial cell of nephron | 5.33e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 2.26e-12 | 82 |
nephron tubule epithelium | 4.86e-11 | 10 |
digestive system | 1.42e-10 | 145 |
digestive tract | 1.42e-10 | 145 |
primitive gut | 1.42e-10 | 145 |
trunk region element | 1.63e-09 | 101 |
subdivision of digestive tract | 5.46e-09 | 118 |
endoderm-derived structure | 8.15e-09 | 160 |
endoderm | 8.15e-09 | 160 |
presumptive endoderm | 8.15e-09 | 160 |
gut epithelium | 5.11e-08 | 54 |
biliary system | 3.07e-07 | 9 |
biliary tree | 3.07e-07 | 9 |
biliary bud | 3.07e-07 | 9 |
nephron epithelium | 5.33e-07 | 15 |
renal tubule | 5.33e-07 | 15 |
nephron tubule | 5.33e-07 | 15 |
nephron | 5.33e-07 | 15 |
uriniferous tubule | 5.33e-07 | 15 |
nephrogenic mesenchyme | 5.33e-07 | 15 |
epithelial bud | 6.62e-07 | 37 |
epithelium of foregut-midgut junction | 7.37e-07 | 25 |
anatomical boundary | 7.37e-07 | 25 |
hepatobiliary system | 7.37e-07 | 25 |
foregut-midgut junction | 7.37e-07 | 25 |
septum transversum | 7.37e-07 | 25 |
abdomen element | 9.17e-07 | 54 |
abdominal segment element | 9.17e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.15e-41 | 106 |
cell type cancer | 6.78e-34 | 143 |
cancer | 6.19e-18 | 235 |
disease of cellular proliferation | 2.85e-17 | 239 |
adenocarcinoma | 5.35e-14 | 25 |
squamous cell carcinoma | 3.19e-12 | 14 |
disease of anatomical entity | 3.11e-09 | 39 |
respiratory system cancer | 5.69e-07 | 16 |