FFCP PHASE1:Hg19::chr3:133293474..133293492,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:133293474..133293492,+
|short_description=p13@CDV3
|description=CAGE_peak_13_at_CDV3_5end
|association_with_transcript=0bp_to_ENST00000507408,ENST000005113...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55573 | |EntrezGene=55573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26928 | |HGNC=26928 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAV0,D6RDN0,D6RFH2 | |UniProt=D6RAV0,D6RDN0,D6RFH2 | ||
|association_with_transcript=0bp_to_ENST00000507408,ENST00000511392,ENST00000515421_5end | |||
|cluster_id=chr3:133293474..133293492,+ | |||
|description=CAGE_peak_13_at_CDV3_5end | |||
|id=chr3:133293474..133293492,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.60e-22!76;CL:0002057!5.30e-21!42;CL:0000860!4.35e-20!45;CL:0000839!2.22e-19!70;CL:0000557!3.81e-19!71;CL:0000738!1.05e-18!140;CL:0002031!7.97e-18!124;CL:0002009!1.66e-17!65;CL:0002194!1.52e-16!63;CL:0000576!1.52e-16!63;CL:0000040!1.52e-16!63;CL:0000559!1.52e-16!63;CL:0002087!6.30e-15!119;CL:0000037!4.07e-12!172;CL:0000566!4.07e-12!172;CL:0002032!6.12e-12!165;CL:0000837!6.12e-12!165;CL:0000763!1.10e-11!112;CL:0000049!1.10e-11!112;CL:0000988!2.57e-11!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.72e-23;33!CL:0002057;1.72e-23;33!CL:0000473;1.82e-20;39!CL:0000234;1.82e-20;39!CL:0000576;2.61e-14;48!CL:0000766;3.27e-14;69!CL:0000623;1.11e-08;3!CL:0002087;1.01e-07;104!CL:0000081;1.43e-07;11!CL:0000094;1.82e-07;8!CL:0000763;3.09e-07;100!CL:0000738;6.38e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.31e-30,72;CL:0000860,4.99e-29,42;CL:0002057,4.99e-29,42;CL:0000473,8.92e-29,48;CL:0000234,8.92e-29,48;CL:0000738,4.72e-27,136;CL:0000557,8.10e-25,67;CL:0000839,1.64e-23,66;CL:0002031,5.32e-23,120;CL:0002009,2.97e-22,61;CL:0002194,1.91e-21,59;CL:0000576,1.91e-21,59;CL:0000040,1.91e-21,59;CL:0000559,1.91e-21,59;CL:0000988,3.01e-21,177;CL:0002032,5.89e-21,161;CL:0000837,5.89e-21,161;CL:0000037,1.21e-20,168;CL:0002087,2.44e-20,115;CL:0000763,1.16e-19,108;CL:0000049,1.16e-19,108;CL:0000623,1.09e-08,3;CL:0000825,1.09e-08,3;CL:0000081,1.11e-07,11;CL:0000134,1.14e-07,354;CL:0000094,1.38e-07,8;CL:0002320,2.88e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.51e-22;42!CL:0000049;2.37e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.58e-23!102;UBERON:0003061!2.58e-23!102;UBERON:0002193!7.91e-21!112;UBERON:0002371!2.03e-18!80;UBERON:0001474!1.49e-16!86;UBERON:0004765!1.13e-15!101;UBERON:0001434!1.13e-15!101;UBERON:0002405!3.80e-13!115;UBERON:0002204!1.07e-08!167;UBERON:0003081!4.03e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.24e-07;15!UBERON:0000179;8.24e-07;15!UBERON:0000463;8.24e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.81e-27,98;UBERON:0003061,2.81e-27,98;UBERON:0002193,9.81e-24,108;UBERON:0002371,2.05e-22,76;UBERON:0001474,1.25e-21,82;UBERON:0004765,2.42e-20,90;UBERON:0002405,3.39e-18,93;UBERON:0001434,2.14e-17,100;UBERON:0003081,1.85e-10,203;UBERON:0002204,2.70e-08,167;UBERON:0002384,3.48e-07,371;UBERON:0000178,7.04e-07,15;UBERON:0000179,7.04e-07,15;UBERON:0000463,7.04e-07,15 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.281908808191942,0,0,0.872338524100369,7.59899634504932,0,0,0,0,0,0.263766978228454,0.866364470720326,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.328402357799783,0.393553906568396,2.36018566109342,1.53531759238885,0.928896739896456,0,0,0,0.0774672005803016,0,0.880801318004542,0.553995408531877,1.80490002723128,0.434021741431704,0,0,0,0.726991193897824,1.13362783106643,0.242584061187816,2.32429036905685,2.05583944010913,0.929119112685311,2.01384674625505,2.30544635876191,0.709446689665756,1.03423704220986,2.5819387343353,0,1.69418105588344,1.09162460023138,0.674170453335254,1.83650335422542,2.56743221660875,1.27867425159808,1.64925650093358,0.199463657621632,0.852449501065388,4.35313857942876,2.8369261234557,2.4912889959823,1.00499466102697,1.0429658368404,2.6062661364614,0.605399502633369,5.52416453981347,3.16462387440884,0.633765858935825,1.70083439972035,2.09658645508376,0.44931452458598,0.450530678524519,0.32145117339416,0.570025487482497,0.59675003159727,1.64397738388171,0,0,0,0,0,0,0,0,0,0,0,0,2.24203425192614,0,1.57367816091066,0.393010762749165,1.02800749499755,0,0.32592226663359,0.473447805734733,0,0.445641827540694,1.76763544484902,0.443067789167242,1.62482318259009,0.384273959177026,0.520237390239513,0,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0,1.37450978193052,0.506039384039006,0,0,0.950452044448374,0.451725357233318,0.255973222308837,0,0,0,1.81446068902259,1.87208137048455,1.88271725047639,0,0,0.639312809217652,0,0,0.289693037921647,0.795285947051099,0,0.567208902984407,0.665188192387692,0.351339142772504,2.35762335895883,0,0,0.97364218096405,0,0.531831842075461,0.238490624305342,0,0,0,0,0,0.56530794192401,0,0,0,0,0.71153252537342,0,0,0,0.24406205754817,0.735326160691737,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,3.87780264148325,0,0.496971951695318,0.25326102332916,0.794455084879313,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0.140450806702248,0.204154171254893,0,0.206651562351531,0,0.247266929278557,0,0,0,0.250237039743928,0.554128230968366,0,0,0.150238058906597,0.567160915800105,0.179389635688862,0.213557388818567,0.847727604638247,0,0.206105058476878,0.257640540045629,0,0,0.194874010322397,0,0.276149695926898,0.323292113637624,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0,0,0.110293972732394,0.217879444092406,0,0.404493924480493,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0.219500570817251,1.1240175325762,0,0.0925884451585296,0,0,0,0.463721619900307,0.234817388471643,0,0.925971025153221,0.190254152234598,0,0,0,1.40402559083543,0.297262324577456,0.93733833986777,1.51183915378974,0.283550194484773,0.895585227028483,0.290633938513962,0,14.7798971368783,0.352193736052904,1.24396869324463,0.720599767084807,1.00993946741104,0,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0.517086863031111,0,0,0,1.04007436911366,0,0,0,0.142977993658148,0,0,0.325736184293735,0.355391948742546,0,1.50719688529793,0.871533458600294,2.0994328148232,0,1.00451418286425,0,0,0,0,0.579125226670317,0,0.179060963239896,0.112085143993527,2.56139988262505,3.66566877261179,3.20857590699371,0.76228387266739,0,0.773288812777695,0,0,0,2.99161459204025,0.828831026872071,0,0.500170521059677,0,0,0.535286966391485,0.946214490203608,0.117141414992713,0.300946099727719,0,0,0,0.184369168541703,0.347534457872331,0,0,0.620304078368662,1.2942852049117,0.213455115606889,0,1.66435439510497,0,0.496215615637554,0.153461973288062,0,0.768834895534206,0,0.160853921143607,0,0,0.177561725313127,0.328508624055237,0.519254429183621,0.116210378459959,0.120859449591622,0.200506470303285,0.0920809889358963,0.229628896329213,0.364182336013434,0.131124414959424,0,0.308061348417659,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0,0,0,0,0.877039506583738,0.261435451024901,0.512900250232778,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0,0,0,0,0,0.308097234229289,0.15350367472613,0,0,0.145016693914229,0,0.356128142586949,0.165284915360978,0.192190067365106,0.255225424989168,0.10115778085555,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0.18532421910392,1.00187420719394,0,0.316379424718726,0.38126038784765,0,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,1.46228093778771,0,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0.578775534266688,0,0.405820753925408,0.30982349809975,0,0.286822704408103,0.491245205065606,0,0,0.211107635297664,0.329294892959902,0,0,0.192444225451024,0,0,0.282431402330337,0,0,0,0.229723400206959,0.507447609232169,0,1.13929437434833,0.476463550915578,0.411362273086194,0,1.62009431171434,2.37937552888281,0.213648142254946,0,0,0,0,0.0711418433484141,0,0,0,0,0.324621940274555,0,0,0,2.50634477090067,0,0,0,0,0,0.307240764308458,0.223676107892416,0,0,0.556812347790485,0,0,0,0,0,0.439524537815682,0,0.334330152832435,0,0,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| ||
|short_description=p13@CDV3 | |||
}} | }} |
Latest revision as of 21:20, 24 September 2015
Short description: | p13@CDV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_CDV3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000507408, ENST00000511392, ENST00000515421_5end |
EntrezGene: | CDV3 |
HGNC: | 26928 |
UniProt: | D6RAV0D6RDN0D6RFH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.31e-30 | 72 |
classical monocyte | 4.99e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-29 | 42 |
defensive cell | 8.92e-29 | 48 |
phagocyte | 8.92e-29 | 48 |
leukocyte | 4.72e-27 | 136 |
granulocyte monocyte progenitor cell | 8.10e-25 | 67 |
myeloid lineage restricted progenitor cell | 1.64e-23 | 66 |
hematopoietic lineage restricted progenitor cell | 5.32e-23 | 120 |
macrophage dendritic cell progenitor | 2.97e-22 | 61 |
monopoietic cell | 1.91e-21 | 59 |
monocyte | 1.91e-21 | 59 |
monoblast | 1.91e-21 | 59 |
promonocyte | 1.91e-21 | 59 |
hematopoietic cell | 3.01e-21 | 177 |
hematopoietic oligopotent progenitor cell | 5.89e-21 | 161 |
hematopoietic multipotent progenitor cell | 5.89e-21 | 161 |
hematopoietic stem cell | 1.21e-20 | 168 |
nongranular leukocyte | 2.44e-20 | 115 |
myeloid cell | 1.16e-19 | 108 |
common myeloid progenitor | 1.16e-19 | 108 |
natural killer cell | 1.09e-08 | 3 |
pro-NK cell | 1.09e-08 | 3 |
blood cell | 1.11e-07 | 11 |
mesenchymal cell | 1.14e-07 | 354 |
granulocyte | 1.38e-07 | 8 |
connective tissue cell | 2.88e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.81e-27 | 98 |
blood island | 2.81e-27 | 98 |
hemolymphoid system | 9.81e-24 | 108 |
bone marrow | 2.05e-22 | 76 |
bone element | 1.25e-21 | 82 |
skeletal element | 2.42e-20 | 90 |
immune system | 3.39e-18 | 93 |
skeletal system | 2.14e-17 | 100 |
lateral plate mesoderm | 1.85e-10 | 203 |
musculoskeletal system | 2.70e-08 | 167 |
connective tissue | 3.48e-07 | 371 |
blood | 7.04e-07 | 15 |
haemolymphatic fluid | 7.04e-07 | 15 |
organism substance | 7.04e-07 | 15 |