FFCP PHASE1:Hg19::chr4:109087991..109087996,-: Difference between revisions
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|id=chr4:109087991..109087996,-
|short_description=p50@LEF1
|description=CAGE_peak_50_at_LEF1_5end
|association_with_transcript=-38bp_to_ENST00000515500,NM_00116611...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | |UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | ||
|association_with_transcript=-38bp_to_ENST00000515500,NM_001166119_5end | |||
|cluster_id=chr4:109087991..109087996,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_50_at_LEF1_5end | |||
|id=chr4:109087991..109087996,- | |||
|ontology_enrichment_celltype=CL:0000084!3.78e-22!25;CL:0000827!3.78e-22!25;CL:0000624!6.91e-21!6;CL:0000791!7.29e-21!18;CL:0000789!7.29e-21!18;CL:0002420!7.29e-21!18;CL:0002419!7.29e-21!18;CL:0000790!7.29e-21!18;CL:0000542!9.15e-18!53;CL:0000051!9.15e-18!53;CL:0000838!9.73e-16!52;CL:0000815!1.91e-11!2;CL:0000792!1.91e-11!2;CL:0002677!1.91e-11!2;CL:0000898!6.68e-08!3;CL:0000625!2.59e-07!11 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!7.83e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.69e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.80e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.36e-11!7;UBERON:0002106!4.59e-07!3;UBERON:0004854!4.59e-07!3;UBERON:0009034!4.59e-07!3;UBERON:0002095!4.59e-07!3;UBERON:0004782!4.59e-07!3;UBERON:0003281!4.59e-07!3;UBERON:0009664!4.59e-07!3;UBERON:0002296!4.59e-07!3;UBERON:0005602!4.59e-07!3;UBERON:0001179!4.59e-07!3;UBERON:0006293!4.59e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.38e-99;2!UBERON:0005058;9.38e-99;2!UBERON:0009113;9.38e-99;2!UBERON:0004177;2.22e-40;5!UBERON:0005057;2.22e-40;5!UBERON:0002368;1.65e-12;33!UBERON:0000949;1.24e-08;43!UBERON:0000077;2.06e-08;27!UBERON:0002405;2.06e-08;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.11e-50,4;UBERON:0005058,3.11e-50,4;UBERON:0009113,3.11e-50,4;UBERON:0003295,3.11e-50,4;UBERON:0005562,3.11e-50,4;UBERON:0003351,5.98e-34,6;UBERON:0004177,2.74e-29,7;UBERON:0005057,2.74e-29,7;UBERON:0000974,6.99e-21,10;UBERON:0003408,6.99e-21,10;UBERON:0001042,6.99e-21,10;UBERON:0009145,6.99e-21,10;UBERON:0006562,4.28e-19,11;UBERON:0009722,4.28e-19,11;UBERON:0007690,4.28e-19,11;UBERON:0002368,1.18e-13,35;UBERON:0008814,4.07e-12,18;UBERON:0001557,1.55e-11,19;UBERON:0000949,7.94e-11,45;UBERON:0003929,3.61e-09,54;UBERON:0002530,1.83e-08,59;UBERON:0004807,3.65e-08,28;UBERON:0000077,6.44e-08,29 | |||
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|short_description=p50@LEF1 | |||
}} | }} |
Latest revision as of 14:53, 24 September 2015
Short description: | p50@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_50_at_LEF1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -38bp_to_ENST00000515500, NM_001166119_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | D6RAB1B7Z8E2E9PDK3Q659G9Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 3.11e-50 | 4 |
hemolymphoid system gland | 3.11e-50 | 4 |
thymic region | 3.11e-50 | 4 |
pharyngeal gland | 3.11e-50 | 4 |
thymus primordium | 3.11e-50 | 4 |
pharyngeal epithelium | 5.98e-34 | 6 |
hemopoietic organ | 2.74e-29 | 7 |
immune organ | 2.74e-29 | 7 |
neck | 6.99e-21 | 10 |
gland of gut | 6.99e-21 | 10 |
chordate pharynx | 6.99e-21 | 10 |
pharyngeal region of foregut | 6.99e-21 | 10 |
pharynx | 4.28e-19 | 11 |
entire pharyngeal arch endoderm | 4.28e-19 | 11 |
early pharyngeal endoderm | 4.28e-19 | 11 |
endocrine gland | 1.18e-13 | 35 |
pharyngeal arch system | 4.07e-12 | 18 |
upper respiratory tract | 1.55e-11 | 19 |
endocrine system | 7.94e-11 | 45 |
gut epithelium | 3.61e-09 | 54 |
gland | 1.83e-08 | 59 |
respiratory system epithelium | 3.65e-08 | 28 |
mixed endoderm/mesoderm-derived structure | 6.44e-08 | 29 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.80e-07 | 8 |