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|has_quality=
|has_quality=
|id=UBERON:0001894
|id=UBERON:0001894
|is_a=UBERON:0002780;;UBERON:0010314
|is_a=UBERON:0002780 ;;UBERON:0010314  
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=diencephalon
|name=diencephalon
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001890
|part_of=UBERON:0001890

Latest revision as of 17:22, 12 September 2014

Name:diencephalon
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href
Xrefs:
links:

AAO:0010481
ABA:IB
BM:Die
BTO:0000342
EFO:0000911
EHDAA2:0000385
EHDAA:1969
EHDAA:2645
EHDAA:3472
EMAPA:16641
EMAPA:16896
EV:0100194
FMA:62001
GAID:618
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000171
MAT:0000420
MESH:A.08.186.211.730.385
MIAA:0000420
ncithesaurus:Diencephalon
NIF_GrossAnatomy:birnlex_1503
OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
SCTID:279328001
TAO:0000101
VHOG:0000318
XAO:0000013

ZFA:0000101
Synonyms: "between brain" EXACT []
"betweenbrain" RELATED [BTO:0000342]
"diencephalon" RELATED LATIN [Wikipedia:Diencephalon]
"interbrain" EXACT [Swanson:2004]
"mature diencephalon" EXACT [FMA:62001]
Comments:Note that in ABA, this is part of the brain stem
Alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0006222(future diencephalon)
part_of:UBERON:0001890(forebrain)



Children

derives from:FF:0010193 (human diencephalon - adult sample),FF:0011291 (mouse diencephalon- adult sample),FF:0011470 (mouse diencephalon- neonate N30 sample)
part of:UBERON:0000007 (pituitary gland),UBERON:0002784 (regional part of diencephalon),UBERON:0003296 (gland of diencephalon),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001894 (diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.15e-112FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_d2a7fe58056ea97a5dfa0d8c6340f2b3p@chr19:7979708..7979734, +
3.15e-112FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_d2a7fe58056ea97a5dfa0d8c6340f2b3p@chr19:7979708..7979734, +
4.43e-90FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_59e001836030ba524fc658c3d824767cp11@SPOCK1
4.43e-90FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_59e001836030ba524fc658c3d824767cp11@SPOCK1
5.58e-90FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_493ce7d05b124a71b42a7ca14fd24085p@chr12:128210626..128210641, -
5.58e-90FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_493ce7d05b124a71b42a7ca14fd24085p@chr12:128210626..128210641, -
1.28e-84FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_fce632260490c7150b422f95cee253c2p@chr19:7979677..7979703, +
1.28e-84FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_fce632260490c7150b422f95cee253c2p@chr19:49519930..49519937, -
1.28e-84FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_fce632260490c7150b422f95cee253c2p@chr19:7979644..7979653, +
1.28e-84FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_fce632260490c7150b422f95cee253c2p@chr19:49519930..49519937, -
1.28e-84FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_fce632260490c7150b422f95cee253c2p@chr19:7979644..7979653, +
1.28e-84FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_fce632260490c7150b422f95cee253c2p@chr19:7979677..7979703, +
1.28e-84FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_fce632260490c7150b422f95cee253c2p1@LHB
1.28e-84FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_fce632260490c7150b422f95cee253c2p1@LHB
1.79e-75FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_f64d5f879d70b09051246473393c1c58p@chr1:99693441..99693485, -
1.79e-75FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_f64d5f879d70b09051246473393c1c58p@chr1:99693441..99693485, -
3.86e-75FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_8be20a9da0e097a07db0efe606d58e09p5@ENST00000513329
3.86e-75FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_8be20a9da0e097a07db0efe606d58e09p5@ENST00000513329
8.06e-65FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_68c975aec6d38413ea33eaa5f27fb320p3@ENST00000443800
8.06e-65FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_68c975aec6d38413ea33eaa5f27fb320p3@ENST00000443800
4.15e-64FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_c36dbc221f651814dcad21836ef8d38fp2@LHX3
4.15e-64FFCP PHASE2:Hg19::chr7:107883809..107883820,-#_c36dbc221f651814dcad21836ef8d38fp11@NRCAM
4.15e-64FFCP PHASE1:Hg19::chr7:107883809..107883820,-#_c36dbc221f651814dcad21836ef8d38fp11@NRCAM
4.15e-64FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_c36dbc221f651814dcad21836ef8d38fp2@LHX3
6.87e-64FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_555b5efaf12d28edabaf55b3a6b740f5p@chr22:47126639..47126654, +
6.87e-64FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_555b5efaf12d28edabaf55b3a6b740f5p@chr22:47126639..47126654, +
1.31e-63FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_a541da6c7b97972342db79bc6273db97p17@LRRC49
1.31e-63FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_a541da6c7b97972342db79bc6273db97p17@LRRC49
1.31e-63FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_a541da6c7b97972342db79bc6273db97p@chr15:75122737..75122741, +
1.31e-63FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_a541da6c7b97972342db79bc6273db97p@chr4:1233005..1233017, +
1.31e-63FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_a541da6c7b97972342db79bc6273db97p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_a541da6c7b97972342db79bc6273db97p@chr4:1233005..1233017, +
1.31e-63FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_a541da6c7b97972342db79bc6273db97p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_a541da6c7b97972342db79bc6273db97p@chr15:75122737..75122741, +
6.8e-62FFCP PHASE1:Mm9::chr11:50767247..50767270,-#_f042e6c6a9eb9c9290b6484f395b23d6p1@Prop1
6.8e-62FFCP PHASE2:Mm9::chr11:50767247..50767270,-#_f042e6c6a9eb9c9290b6484f395b23d6p1@Prop1
8.33e-61FFCP PHASE2:Mm9::chr4:34840978..34840987,+#_5baf18f3efd2d38659fc869de09a1207p3@Cga
8.33e-61FFCP PHASE1:Mm9::chr3:102586593..102586598,-#_5baf18f3efd2d38659fc869de09a1207p1@Tshb
8.33e-61FFCP PHASE2:Mm9::chr4:139040826..139040847,+#_5baf18f3efd2d38659fc869de09a1207p@chr4:139040826..139040847, +
8.33e-61FFCP PHASE1:Mm9::chr2:157395240..157395251,-#_5baf18f3efd2d38659fc869de09a1207p@chr2:157395240..157395251, -
8.33e-61FFCP PHASE1:Mm9::chr5:33861619..33861630,-#_5baf18f3efd2d38659fc869de09a1207p@chr5:33861619..33861630, -
8.33e-61FFCP PHASE1:Mm9::chr4:34840978..34840987,+#_5baf18f3efd2d38659fc869de09a1207p3@Cga
8.33e-61FFCP PHASE1:Mm9::chr4:139040826..139040847,+#_5baf18f3efd2d38659fc869de09a1207p@chr4:139040826..139040847, +
8.33e-61FFCP PHASE2:Mm9::chr3:102586593..102586598,-#_5baf18f3efd2d38659fc869de09a1207p1@Tshb
8.33e-61FFCP PHASE1:Mm9::chr16:65520838..65520853,+#_5baf18f3efd2d38659fc869de09a1207p1@Pou1f1
8.33e-61FFCP PHASE2:Mm9::chr7:86033242..86033245,+#_5baf18f3efd2d38659fc869de09a1207p1@Mir7-2
8.33e-61FFCP PHASE1:Mm9::chr7:86033242..86033245,+#_5baf18f3efd2d38659fc869de09a1207p1@Mir7-2
8.33e-61FFCP PHASE2:Mm9::chr5:33861619..33861630,-#_5baf18f3efd2d38659fc869de09a1207p@chr5:33861619..33861630, -
8.33e-61FFCP PHASE2:Mm9::chr16:65520838..65520853,+#_5baf18f3efd2d38659fc869de09a1207p1@Pou1f1
8.33e-61FFCP PHASE2:Mm9::chr2:157395240..157395251,-#_5baf18f3efd2d38659fc869de09a1207p@chr2:157395240..157395251, -
4.76e-57FFCP PHASE1:Hg19::chr12:89881337..89881342,-#_b22930b62f26c452fa2fc1df5691ea62p@chr12:89881337..89881342, -
4.76e-57FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_b22930b62f26c452fa2fc1df5691ea62p@chr11:84530787..84530803, +
4.76e-57FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18063669..18063678, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996252..61996253,-#_b22930b62f26c452fa2fc1df5691ea62p2@GH1, p3@CSHL1
4.76e-57FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_b22930b62f26c452fa2fc1df5691ea62p@chr12:56582028..56582062, +
4.76e-57FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18039672..18039678, -
4.76e-57FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_b22930b62f26c452fa2fc1df5691ea62p@chr16:1210506..1210513, -
4.76e-57FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_b22930b62f26c452fa2fc1df5691ea62p@chr1:13820103..13820109, +
4.76e-57FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:72297717..72297725, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996393..61996421,-#_b22930b62f26c452fa2fc1df5691ea62p4@CSHL1, p4@GH1
4.76e-57FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_b22930b62f26c452fa2fc1df5691ea62p@chr14:55282406..55282415, -
4.76e-57FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_b22930b62f26c452fa2fc1df5691ea62p22@TUBA1C
4.76e-57FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_b22930b62f26c452fa2fc1df5691ea62p@chr18:56962131..56962138, -
4.76e-57FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_b22930b62f26c452fa2fc1df5691ea62p15@CABP1
4.76e-57FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18040537..18040547, -
4.76e-57FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_b22930b62f26c452fa2fc1df5691ea62p@chr12:99734965..99734976, -
4.76e-57FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_b22930b62f26c452fa2fc1df5691ea62p9@GNB3
4.76e-57FFCP PHASE1:Hg19::chr17:61995371..61995384,+#_b22930b62f26c452fa2fc1df5691ea62p@chr17:61995371..61995384, +
4.76e-57FFCP PHASE1:Hg19::chr17:61995410..61995414,-#_b22930b62f26c452fa2fc1df5691ea62p@chr17:61995410..61995414, -
4.76e-57FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_b22930b62f26c452fa2fc1df5691ea62p@chr15:47662877..47662880, -
4.76e-57FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_b22930b62f26c452fa2fc1df5691ea62p5@AANAT
4.76e-57FFCP PHASE1:Hg19::chr17:61995906..61995914,-#_b22930b62f26c452fa2fc1df5691ea62p6@AB591020
4.76e-57FFCP PHASE1:Hg19::chr17:61995704..61995739,+#_b22930b62f26c452fa2fc1df5691ea62p@chr17:61995704..61995739, +
4.76e-57FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_b22930b62f26c452fa2fc1df5691ea62p@chr16:17930871..17930877, -
4.76e-57FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_b22930b62f26c452fa2fc1df5691ea62p9@LOC100507050
4.76e-57FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_b22930b62f26c452fa2fc1df5691ea62p@chr12:15134610..15134617, +
4.76e-57FFCP PHASE1:Hg19::chr19:49519519..49519562,-#_b22930b62f26c452fa2fc1df5691ea62p2@CU678753
4.76e-57FFCP PHASE1:Hg19::chr17:61996018..61996019,-#_b22930b62f26c452fa2fc1df5691ea62p5@AB591020
4.76e-57FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:52650486..52650491, -
4.76e-57FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:52650530..52650533, -
4.76e-57FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18041194..18041197, -
4.76e-57FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18067951..18067954, -
4.76e-57FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_b22930b62f26c452fa2fc1df5691ea62p1@BC014398
4.76e-57FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_b22930b62f26c452fa2fc1df5691ea62p@chr16:18066399..18066411, -
4.76e-57FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_b22930b62f26c452fa2fc1df5691ea62p@chr12:55422293..55422300, +
4.76e-57FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_b22930b62f26c452fa2fc1df5691ea62p@chr12:55422565..55422604, +
4.76e-57FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_b22930b62f26c452fa2fc1df5691ea62p4@AANAT
4.76e-57FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_b22930b62f26c452fa2fc1df5691ea62p@chr10:80984180..80984190, -
4.76e-57FFCP PHASE1:Hg19::chr12:89881348..89881356,-#_b22930b62f26c452fa2fc1df5691ea62p@chr12:89881348..89881356, -
4.76e-57FFCP PHASE1:Hg19::chr19:2608406..2608413,-#_b22930b62f26c452fa2fc1df5691ea62p@chr19:2608406..2608413, -
4.76e-57FFCP PHASE1:Hg19::chr17:61995979..61995990,-#_b22930b62f26c452fa2fc1df5691ea62p2@AB591020
4.76e-57FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_b22930b62f26c452fa2fc1df5691ea62p@chr11:18042584..18042593, -
4.76e-57FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:56628524..56628547, -
4.76e-57FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_b22930b62f26c452fa2fc1df5691ea62p@chr16:18066392..18066397, -
4.76e-57FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_b22930b62f26c452fa2fc1df5691ea62p@chr18:56963093..56963105, -
4.76e-57FFCP PHASE1:Hg19::chr17:61996160..61996176,-#_b22930b62f26c452fa2fc1df5691ea62p3@GH1
4.76e-57FFCP PHASE1:Hg19::chr16:21049173..21049231,-#_b22930b62f26c452fa2fc1df5691ea62p@chr16:21049173..21049231, -
4.76e-57FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_b22930b62f26c452fa2fc1df5691ea62p@chr12:60826120..60826127, +
4.76e-57FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_b22930b62f26c452fa2fc1df5691ea62p@chr18:56963107..56963117, -
4.76e-57FFCP PHASE1:Hg19::chr10:123959529..123959547,+#_b22930b62f26c452fa2fc1df5691ea62p@chr10:123959529..123959547, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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