FFCP PHASE1:Hg19::chr6:31540056..31540074,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:31540056..31540074,+
|short_description=p1@LTA
|description=CAGE_peak_1_at_LTA_5end
|association_with_transcript=0bp_to_ENST00000418386,ENST00000471842_5en...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4049 | |EntrezGene=4049 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6709 | |HGNC=6709 | ||
|TSSclassifier=strong | |||
|UniProt=P01374 | |UniProt=P01374 | ||
|association_with_transcript=0bp_to_ENST00000418386,ENST00000471842_5end | |||
|cluster_id=chr6:31540056..31540074,+ | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_1_at_LTA_5end | |||
|id=chr6:31540056..31540074,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.75e-46!140;CL:0000542!4.18e-46!53;CL:0000051!4.18e-46!53;CL:0000838!6.21e-45!52;CL:0002087!3.87e-42!119;CL:0000988!1.42e-36!182;CL:0000037!2.62e-36!172;CL:0000566!2.62e-36!172;CL:0002031!2.89e-35!124;CL:0002032!1.53e-32!165;CL:0000837!1.53e-32!165;CL:0000945!7.01e-22!24;CL:0000826!7.01e-22!24;CL:0000084!2.51e-20!25;CL:0000827!2.51e-20!25;CL:0000791!9.60e-18!18;CL:0000789!9.60e-18!18;CL:0002420!9.60e-18!18;CL:0002419!9.60e-18!18;CL:0000790!9.60e-18!18;CL:0000236!2.58e-12!14;CL:0000625!2.46e-10!11;CL:0000080!2.38e-08!6;CL:0000624!6.60e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;9.23e-35;53!CL:0000945;1.77e-29;24!CL:0000084;1.40e-27;25!CL:0000791;1.51e-25;18!CL:0000789;1.51e-25;18!CL:0002419;1.51e-25;18!CL:0002087;4.34e-15;104!CL:0000625;1.54e-14;11!CL:0000236;1.37e-13;13!CL:0000624;5.35e-11;6!CL:0000738;4.45e-07;136!CL:0000623;9.56e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.08e-63,53;CL:0000051,1.08e-63,53;CL:0000838,5.59e-62,52;CL:0002087,2.92e-42,115;CL:0000738,3.47e-37,136;CL:0002031,4.52e-35,120;CL:0000945,1.14e-29,24;CL:0000826,1.14e-29,24;CL:0000988,1.83e-29,177;CL:0000037,7.93e-28,168;CL:0000084,1.43e-27,25;CL:0000827,1.43e-27,25;CL:0002032,2.70e-26,161;CL:0000837,2.70e-26,161;CL:0000791,1.29e-25,18;CL:0000789,1.29e-25,18;CL:0002420,1.29e-25,18;CL:0002419,1.29e-25,18;CL:0000790,1.29e-25,18;CL:0000236,1.82e-15,14;CL:0000625,1.08e-14,11;CL:0000624,6.84e-11,6;CL:0000623,8.95e-07,3;CL:0000825,8.95e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;9.23e-35;53!CL:0000790;1.51e-25;18 | |||
|ontology_enrichment_disease=DOID:0060058!4.18e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.34e-16!15;UBERON:0000179!2.34e-16!15;UBERON:0000463!2.34e-16!15;UBERON:0002390!2.51e-14!102;UBERON:0003061!2.51e-14!102;UBERON:0002193!1.92e-13!112;UBERON:0004177!6.86e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.44e-20;15!UBERON:0000179;1.44e-20;15!UBERON:0000463;1.44e-20;15!UBERON:0002390;2.68e-14;32!UBERON:0004177;2.53e-09;5!UBERON:0005057;2.53e-09;5!UBERON:0002193;2.32e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.17e-20,15;UBERON:0000179,1.17e-20,15;UBERON:0000463,1.17e-20,15;UBERON:0004177,2.47e-12,7;UBERON:0005057,2.47e-12,7;UBERON:0002390,5.82e-11,98;UBERON:0003061,5.82e-11,98;UBERON:0002193,7.65e-11,108;UBERON:0002370,5.59e-08,4;UBERON:0005058,5.59e-08,4;UBERON:0009113,5.59e-08,4;UBERON:0003295,5.59e-08,4;UBERON:0005562,5.59e-08,4 | |||
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| ||
|short_description=p1@LTA | |||
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Latest revision as of 21:08, 17 September 2015
Short description: | p1@LTA |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LTA_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 0bp_to_ENST00000418386, ENST00000471842_5end |
EntrezGene: | LTA |
HGNC: | 6709 |
UniProt: | P01374 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.08e-63 | 53 |
common lymphoid progenitor | 1.08e-63 | 53 |
lymphoid lineage restricted progenitor cell | 5.59e-62 | 52 |
nongranular leukocyte | 2.92e-42 | 115 |
leukocyte | 3.47e-37 | 136 |
hematopoietic lineage restricted progenitor cell | 4.52e-35 | 120 |
lymphocyte of B lineage | 1.14e-29 | 24 |
pro-B cell | 1.14e-29 | 24 |
hematopoietic cell | 1.83e-29 | 177 |
hematopoietic stem cell | 7.93e-28 | 168 |
T cell | 1.43e-27 | 25 |
pro-T cell | 1.43e-27 | 25 |
hematopoietic oligopotent progenitor cell | 2.70e-26 | 161 |
hematopoietic multipotent progenitor cell | 2.70e-26 | 161 |
mature alpha-beta T cell | 1.29e-25 | 18 |
alpha-beta T cell | 1.29e-25 | 18 |
immature T cell | 1.29e-25 | 18 |
mature T cell | 1.29e-25 | 18 |
immature alpha-beta T cell | 1.29e-25 | 18 |
B cell | 1.82e-15 | 14 |
CD8-positive, alpha-beta T cell | 1.08e-14 | 11 |
CD4-positive, alpha-beta T cell | 6.84e-11 | 6 |
natural killer cell | 8.95e-07 | 3 |
pro-NK cell | 8.95e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.17e-20 | 15 |
haemolymphatic fluid | 1.17e-20 | 15 |
organism substance | 1.17e-20 | 15 |
hemopoietic organ | 2.47e-12 | 7 |
immune organ | 2.47e-12 | 7 |
hematopoietic system | 5.82e-11 | 98 |
blood island | 5.82e-11 | 98 |
hemolymphoid system | 7.65e-11 | 108 |
thymus | 5.59e-08 | 4 |
hemolymphoid system gland | 5.59e-08 | 4 |
thymic region | 5.59e-08 | 4 |
pharyngeal gland | 5.59e-08 | 4 |
thymus primordium | 5.59e-08 | 4 |