FFCP PHASE1:Hg19::chr7:142494497..142494508,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:142494497..142494508,+
|short_description=p2@TRBJ2-3
|description=CAGE_peak_2_at_TRBJ2-3_5end
|association_with_transcript=-22bp_to_ENST00000390415_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12171 | |HGNC=12171 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000390415_5end | |||
|cluster_id=chr7:142494497..142494508,+ | |||
|coexpression_cluster_id=C861 | |||
|description=CAGE_peak_2_at_TRBJ2-3_5end | |||
|id=chr7:142494497..142494508,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.47e-30!53;CL:0000051!1.47e-30!53;CL:0000838!1.69e-29!52;CL:0000084!1.54e-19!25;CL:0000827!1.54e-19!25;CL:0000791!8.70e-18!18;CL:0000789!8.70e-18!18;CL:0002420!8.70e-18!18;CL:0002419!8.70e-18!18;CL:0000790!8.70e-18!18;CL:0000625!2.31e-11!11;CL:0002087!1.99e-10!119;CL:0000236!4.42e-10!14;CL:0000738!2.40e-09!140;CL:0000945!4.50e-09!24;CL:0000826!4.50e-09!24;CL:0002031!3.48e-07!124;CL:0000624!6.82e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.70e-23;53!CL:0000236;7.58e-23;13!CL:0000084;1.22e-15;25!CL:0000791;5.01e-15;18!CL:0000789;5.01e-15;18!CL:0002419;5.01e-15;18!CL:0002577;9.83e-12;3!CL:0000945;1.44e-11;24!CL:0000625;2.26e-11;11!CL:0000623;2.28e-11;3!CL:0002536;3.70e-09;2!CL:0000815;1.66e-08;2!CL:0000792;1.66e-08;2!CL:0002677;1.66e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.20e-35,53;CL:0000051,4.20e-35,53;CL:0000838,1.03e-32,52;CL:0000236,2.01e-21,14;CL:0000084,1.43e-15,25;CL:0000827,1.43e-15,25;CL:0000791,5.43e-15,18;CL:0000789,5.43e-15,18;CL:0002420,5.43e-15,18;CL:0002419,5.43e-15,18;CL:0000790,5.43e-15,18;CL:0002087,9.50e-13,115;CL:0002577,7.10e-12,3;CL:0000945,9.43e-12,24;CL:0000826,9.43e-12,24;CL:0000623,1.15e-11,3;CL:0000825,1.15e-11,3;CL:0000625,2.66e-11,11;CL:0000738,5.93e-11,136;CL:0002031,8.77e-11,120;CL:0002536,4.03e-09,2;CL:0000037,1.31e-08,168;CL:0000815,1.33e-08,2;CL:0000792,1.33e-08,2;CL:0002677,1.33e-08,2;CL:0002032,2.29e-08,161;CL:0000837,2.29e-08,161;CL:0000988,7.10e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.70e-23;53!CL:0000790;5.01e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;6.56e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,5.16e-09,4;UBERON:0004340,5.16e-09,4 | |||
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| ||
|short_description=p2@TRBJ2-3 | |||
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Latest revision as of 21:33, 16 September 2015
Short description: | p2@TRBJ2-3 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRBJ2-3_5end |
Coexpression cluster: | C861_CD19_chronic_NK_Natural_lymphangiectasia_acute_CD8 |
Association with transcript: | -22bp_to_ENST00000390415_5end |
EntrezGene: | NA |
HGNC: | 12171 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.20e-35 | 53 |
common lymphoid progenitor | 4.20e-35 | 53 |
lymphoid lineage restricted progenitor cell | 1.03e-32 | 52 |
B cell | 2.01e-21 | 14 |
T cell | 1.43e-15 | 25 |
pro-T cell | 1.43e-15 | 25 |
mature alpha-beta T cell | 5.43e-15 | 18 |
alpha-beta T cell | 5.43e-15 | 18 |
immature T cell | 5.43e-15 | 18 |
mature T cell | 5.43e-15 | 18 |
immature alpha-beta T cell | 5.43e-15 | 18 |
nongranular leukocyte | 9.50e-13 | 115 |
placental epithelial cell | 7.10e-12 | 3 |
lymphocyte of B lineage | 9.43e-12 | 24 |
pro-B cell | 9.43e-12 | 24 |
natural killer cell | 1.15e-11 | 3 |
pro-NK cell | 1.15e-11 | 3 |
CD8-positive, alpha-beta T cell | 2.66e-11 | 11 |
leukocyte | 5.93e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 8.77e-11 | 120 |
amniotic epithelial cell | 4.03e-09 | 2 |
hematopoietic stem cell | 1.31e-08 | 168 |
regulatory T cell | 1.33e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.33e-08 | 2 |
naive regulatory T cell | 1.33e-08 | 2 |
hematopoietic oligopotent progenitor cell | 2.29e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-08 | 161 |
hematopoietic cell | 7.10e-08 | 177 |