FFCP PHASE1:Hg19::chr10:8097295..8097320,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2625 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4172 | |||
|TSSclassifier=strong | |||
|UniProt=P23771 | |||
|association_with_transcript=-97bp_to_X55122_5end | |||
|cluster_id=chr10:8097295..8097320,+ | |||
|coexpression_cluster_id=C1124 | |||
|description=CAGE_peak_6_at_GATA3_5end | |||
|id=chr10:8097295..8097320,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.16e-09!25;CL:0000827!1.16e-09!25;CL:0000791!3.97e-07!18;CL:0000789!3.97e-07!18;CL:0002420!3.97e-07!18;CL:0002419!3.97e-07!18;CL:0000790!3.97e-07!18;CL:0000838!8.81e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.18e-22;19!CL:0002541;1.23e-12;3!CL:0002577;3.35e-12;3!CL:0000623;1.12e-11;3!CL:0002536;7.38e-09;2!CL:0002537;1.37e-07;5!CL:0000333;3.53e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.32e-22,19;CL:0002541,1.34e-12,3;CL:0002577,3.63e-12,3;CL:0000623,8.34e-12,3;CL:0000825,8.34e-12,3;CL:0002536,8.00e-09,2;CL:0002537,1.34e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;4.71e-17;4!DOID:1612;4.71e-17;4!DOID:3095;8.81e-08;22!DOID:2994;8.81e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.83e-17,4;DOID:1612,4.83e-17,4;DOID:3095,8.63e-08,22;DOID:2994,8.63e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.25e-12!14;UBERON:0000158!2.25e-12!14;UBERON:0003124!1.65e-09!7;UBERON:0000478!9.78e-09!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.06e-24;24!UBERON:0005631;4.81e-24;10!UBERON:0000158;4.81e-24;10!UBERON:0001987;2.04e-15;4!UBERON:0000305;7.45e-14;7!UBERON:0003124;1.23e-12;3!UBERON:0000920;1.23e-12;3!UBERON:0002370;3.77e-08;2!UBERON:0005058;3.77e-08;2!UBERON:0009113;3.77e-08;2!UBERON:0000013;3.53e-07;5!UBERON:0002410;3.53e-07;5!UBERON:0000310;8.33e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.70e-37,14;UBERON:0000158,1.70e-37,14;UBERON:0003124,2.18e-26,7;UBERON:0000478,1.85e-24,24;UBERON:0001987,1.52e-15,4;UBERON:0004340,1.52e-15,4;UBERON:0000305,7.69e-14,7;UBERON:0000920,1.34e-12,3;UBERON:0004871,4.53e-12,8;UBERON:0000013,3.39e-07,5;UBERON:0002410,3.39e-07,5;UBERON:0000310,8.41e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,3.27662058195258,2.11013582582763,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.152826811495903,0,0.157421562627358,0,0.767658796194425,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0,1.96709770113833,5.89516144123747,1.43921049299656,0.501559486172034,0,0.473447805734733,0,2.22820913770347,0.589211814949674,0.221533894583621,0.812411591295047,1.0247305578054,1.56071217071854,1.31550323682941,0.829050053357545,1.15921234294021,0.741432815810302,0,0,1.0197840842781,0.383220493601921,0.68725489096526,2.02415753615602,0.637130828648193,0,0,0,0.76791966692651,0,0,0.821127996921047,1.61285394579786,3.20928234940209,0.868946423296794,0,1.34140171940727,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.535798369704479,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0.882926198829301,0.245976877086227,0,0.548751427043128,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,14.223679163267,13.735778593518,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.18218456121156,1.94064817373566,2.43851768931522,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,0.647142602455851,0.74709290462411,1.21251028578504,3.32870879020994,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,1.20303882181971,0.368323955743585,0,0,0,0.902399225814824,0.385076685522074,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0.515205058238611,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0.229723400206959,0.507447609232169,0,0.569647187174163,0.238231775457789,0.411362273086194,0,0,0.79312517629427,0,0,0.490080431962063,0,0,1.35169502361987,0.797131363644112,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,1.5602073798847,0.284136146806413,2.3874448473769,2.07875276582847,3.37876772309155,0,0,0,0.16480387422676,0,0,0,0,0,0.246169610922139,0,0,0.537063524026827,0,0.0986434056369336,2.3948309234694,0,0,0.0927680981618513,0,16.4069489483697,6.64695999971087,0,0.1137934482855,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,6.68635322725374,6.28303510868405,5.54101596802241,9.57003479195758,1.28236630762607,28.2508431289876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0.391329237864179,0,1.18375320854817,0,0,0,0,0.207376382794494,0,0.330991955875499,0.313932918407225,0,0,0.416024019039416,0,0.195984794828755,0.174118413160805,0.873633341210151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0.229073192331831,0,0,0.124252535565433,0.235694034616795,0,0,0.101998217636322,0.577901179803038,0,0,0,0,0,0,0,0,1.19807400299395,0,0,0,0,1.16495949527454,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.996637174564964,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0.258565912723101,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34833881285112,0,0.260994291965212,0.226705925512272,0.231522474323834,0.489473409012935,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0,0.194860308839388,0,0,0,0.491545817507439,0,0.999936979274649,0,0,0.567515953566836,0,0,0,1.27894371303652,1.61737217095023,0,2.07498312564826,0,0,0.495743057036009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.40341013740704,0,4.19050711170276,0,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,1.77404740325278,0.115233987555779,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,4.65725755210022,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,1.41157948686277,0,0,0.458729283404541,0,0.157771562193185,0,0,0,0,0,0,0,0,6.96841755562903,0,0.26721740526556,0.36757959813938,0,0.0757786982182394,0,0.829169439458779,0,0,0.714193294391221,1.67931165573616,1.80016671457988,0.224263725161227,0.318235791390825,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0.244209805832924,0,0,0.449126010532934,2.34640942403454,0,0.406896178315738,0.665756774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| |||
|short_description=p6@GATA3 | |||
}} |
Latest revision as of 12:07, 19 September 2015
Short description: | p6@GATA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GATA3_5end |
Coexpression cluster: | C1124_MCF7_breast_chorionic_nasal_choriocarcinoma_seminal_amniotic |
Association with transcript: | -97bp_to_X55122_5end |
EntrezGene: | GATA3 |
HGNC: | 4172 |
UniProt: | P23771 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.32e-22 | 19 |
chorionic membrane mesenchymal stem cell | 1.34e-12 | 3 |
placental epithelial cell | 3.63e-12 | 3 |
natural killer cell | 8.34e-12 | 3 |
pro-NK cell | 8.34e-12 | 3 |
amniotic epithelial cell | 8.00e-09 | 2 |
amnion mesenchymal stem cell | 1.34e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.70e-37 | 14 |
membranous layer | 1.70e-37 | 14 |
chorion | 2.18e-26 | 7 |
extraembryonic structure | 1.85e-24 | 24 |
placenta | 1.52e-15 | 4 |
allantois | 1.52e-15 | 4 |
amnion | 7.69e-14 | 7 |
egg chorion | 1.34e-12 | 3 |
somatic layer of lateral plate mesoderm | 4.53e-12 | 8 |
sympathetic nervous system | 3.39e-07 | 5 |
autonomic nervous system | 3.39e-07 | 5 |
breast | 8.41e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.83e-17 | 4 |
breast cancer | 4.83e-17 | 4 |
germ cell and embryonal cancer | 8.63e-08 | 22 |
germ cell cancer | 8.63e-08 | 22 |