FFCP PHASE1:Hg19::chr12:49208243..49208282,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=784 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1403 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000549226_5end | |||
|cluster_id=chr12:49208243..49208282,+ | |||
|description=CAGE_peak_4_at_CACNB3_5end | |||
|id=chr12:49208243..49208282,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.28e-27!180;CL:0000183!1.16e-16!59;CL:0000680!3.55e-16!57;CL:0000056!3.55e-16!57;CL:0000355!3.55e-16!57;CL:0000057!8.09e-15!75;CL:0000187!9.41e-15!54;CL:0000192!4.38e-14!42;CL:0000514!4.38e-14!42;CL:0000393!1.93e-12!60;CL:0000211!1.93e-12!60;CL:0000222!1.87e-10!119;CL:0000220!2.06e-08!246;CL:0000359!2.24e-08!32;CL:0002321!2.44e-08!248;CL:0002620!1.70e-07!23;CL:0002371!3.12e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.32e-11;43!CL:0000187;1.86e-09;55!CL:0000134;2.71e-08;55!CL:0000393;1.28e-07;61!CL:0000211;1.28e-07;61!CL:0002620;1.59e-07;23!CL:0000359;6.33e-07;32!CL:0000048;8.73e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.53e-18,58;CL:0000056,1.53e-18,58;CL:0000355,1.53e-18,58;CL:0000187,1.40e-16,55;CL:0000192,2.45e-15,43;CL:0000514,2.45e-15,43;CL:0000057,8.99e-15,76;CL:0000393,1.34e-13,61;CL:0000211,1.34e-13,61;CL:0000222,3.08e-10,121;CL:0000048,8.81e-09,427;CL:0000723,3.62e-08,433;CL:0002620,5.87e-08,23;CL:0000034,2.15e-07,441;CL:0000359,3.48e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.32e-11;43!CL:0000355;9.32e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.30e-20!83;UBERON:0002329!8.30e-20!83;UBERON:0003077!8.30e-20!83;UBERON:0003059!8.30e-20!83;UBERON:0007282!8.30e-20!83;UBERON:0009618!8.30e-20!83;UBERON:0007285!8.30e-20!83;UBERON:0005256!2.85e-17!143;UBERON:0004290!1.02e-16!70;UBERON:0000486!4.39e-16!82;UBERON:0002385!3.48e-14!63;UBERON:0001015!3.48e-14!63;UBERON:0000383!3.48e-14!63;UBERON:0001134!6.50e-14!61;UBERON:0002036!6.50e-14!61;UBERON:0003082!6.50e-14!61;UBERON:0002100!6.64e-14!216;UBERON:0003104!4.56e-13!238;UBERON:0009142!4.56e-13!238;UBERON:0000481!1.70e-11!347;UBERON:0000475!8.31e-11!365;UBERON:0000468!2.71e-10!659;UBERON:0000926!5.32e-09!448;UBERON:0004120!5.32e-09!448;UBERON:0006603!5.32e-09!448;UBERON:0003102!8.13e-09!95;UBERON:0002049!1.92e-08!79;UBERON:0007798!1.92e-08!79;UBERON:0000467!3.21e-08!625;UBERON:0000480!4.81e-08!626;UBERON:0001637!5.88e-08!42;UBERON:0003509!5.88e-08!42;UBERON:0004572!5.88e-08!42;UBERON:0000490!1.16e-07!138;UBERON:0004573!8.50e-07!33;UBERON:0004571!8.50e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.80e-07;31!UBERON:0001015;1.80e-07;31!UBERON:0000383;1.80e-07;31!UBERON:0002204;1.82e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.87e-19,78;UBERON:0002329,1.96e-18,71;UBERON:0003059,1.96e-18,71;UBERON:0007282,1.96e-18,71;UBERON:0004290,1.96e-18,71;UBERON:0009618,1.96e-18,71;UBERON:0003077,6.12e-18,72;UBERON:0007285,6.12e-18,72;UBERON:0007524,1.85e-17,73;UBERON:0000486,8.94e-17,83;UBERON:0001134,2.30e-16,62;UBERON:0002036,2.30e-16,62;UBERON:0003082,2.30e-16,62;UBERON:0002385,3.72e-16,64;UBERON:0001015,3.72e-16,64;UBERON:0000383,3.72e-16,64;UBERON:0003104,2.04e-13,160;UBERON:0009142,2.04e-13,160;UBERON:0005256,1.35e-12,122;UBERON:0002100,6.40e-09,199;UBERON:0000926,2.58e-07,315;UBERON:0004120,2.58e-07,315;UBERON:0006603,2.58e-07,315;UBERON:0003102,3.17e-07,99;UBERON:0000490,3.58e-07,148;UBERON:0001637,4.69e-07,42;UBERON:0003509,4.69e-07,42;UBERON:0004572,4.69e-07,42;UBERON:0002204,6.95e-07,167;UBERON:0004573,8.69e-07,33;UBERON:0004571,8.69e-07,33;UBERON:0002199,9.93e-07,46;UBERON:0002416,9.93e-07,46 | |||
|phase1_expression=3.08853244759946,0.428201047781966,2.81908808191942,1.0007329835313,0.446961094427288,0.872338524100369,0,1.26343974685366,0.522371256399677,2.7030733015166,0,1.31064823278103,1.05506791291381,5.07442047136191,4.30816588446291,0,1.20538905604795,3.65155045193687,1.46379839637152,0.369363174230364,1.42800483870977,0.313454721478088,0.572471974262113,0.410623275218653,0.376627918784408,0.0764134057479513,0.0821005894499457,0,0,0.383829398097213,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0.200544447470142,0,0.447830948479849,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0,0,0.605399502633369,0.368277635987565,0.632924774881769,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0.127986611154418,0,0,0,0,0,0,0,2.68280343881454,0,5.42158728576849,2.50668955317945,2.75208386025565,0,1.45990461090791,0.756278537312543,0.665188192387692,0.614843499851882,2.0956652079634,1.82147644146271,0.741568885568859,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,0,0.419499436209906,0.275118041940067,1.04497483268405,1.03366703667732,1.06729878806013,0.66944122552934,0.805658634218294,0,0.732186172644509,0.367663080345869,2.43042584364528,0.535798369704479,0.22452937262617,0.563057402416611,0,0.949265659568129,0.183201743930407,0,0,0.436094052142534,0.993943903390637,1.51956613997496,2.78059279707759,0.860509862246441,1.06400514659507,0.560677600142307,0,0,2.17847724779836,1.0776853765575,0.817309515567294,1.36221684880438,0,2.57753575017176,3.43376084513353,3.4228309292667,2.54062756938062,0.822041490506354,0.971237666208789,0.421352420106746,1.02077085627447,1.84251475967652,1.44656093646072,4.75201142912821,1.23633464639278,6.37112953356618,5.74894513452991,1.68336113954066,1.00094815897571,1.93944880838928,1.75591048352335,0.919463387397059,3.30523729594513,0.453728732640084,1.97328599257748,1.92201649936711,1.90738711043606,2.40072876867522,1.75189299705346,1.28820270022815,2.04728541964749,2.53164498361899,1.07180705677318,4.29137416214995,1.65689817556139,3.23292113637624,2.84007674013291,1.10827308050404,1.69560592310488,0.773043412653187,1.36373060295417,1.14721838155602,0.121973706129595,0.265059536642971,0.232387885739037,0.310983165046111,0.756962552626885,0,1.56449532329816,1.92972281457866,4.14404764057442,1.39310378409594,2.16563844500876,3.54920400119532,1.85443159085912,0.723033089650446,2.31617342738027,2.39667388501647,4.50814176311084,1.34831308160164,1.76599318612811,0.38474715694639,1.4763109092493,0,0.8231480226628,1.47008711385542,0,0,0,0,0.122988438543114,1.88724591328378,0.98775256867763,0,0,0.370353780634118,0.651616610620649,6.23960871167747,0,0,0.469634776943287,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0.93733833986777,1.34385702559088,1.98485136139341,0,0,0.766765358330422,0,0.088048434013226,0.414656231081544,1.00883967391873,0.37872730027914,0.761974731506028,1.14596527667483,3.51652341630141,1.71072446022705,0.308482478109971,1.50171528921959,0.857479297891735,0.672786506072164,0,1.0267360014933,1.68053230485111,17.8828222925941,0,6.91439103120663,8.32059495290929,6.94459910507784,1.41849132023278,10.3904649816279,1.71573592389777,0.542621605391443,0,0.65147236858747,0.355391948742546,2.37585561880029,2.41151501647669,3.48613383440118,1.49959486773086,0,0,0,0.958499421966331,2.29723871668228,0,2.17171960001369,3.28762116080613,3.58121926479791,0,0.197030760201927,0,0.513372145118994,0,0,0,0.335032530668698,0,0,0,0,2.4538298343828,2.50085260529839,1.62759014219841,18.301435814711,6.42344359669782,6.30809660135739,4.68565659970853,0.902838299183157,0,1.03473071292505,2.65690239414175,1.29058417979192,1.56390506042549,2.34961388955289,1.02943027143257,0,0,0,1.21251028578504,1.66435439510497,0.604780586659361,1.24053903909388,2.455391572609,1.12264037773229,0.128139149255701,1.02341449813341,0.965123526861645,1.48418066444991,2.7757744884478,1.59805552781814,2.29956036838666,2.07701771673448,3.95115286763861,0.120859449591622,0.601519410909855,0.0920809889358963,4.82220682291348,2.36718518408732,7.0807184078089,2.70719767744447,1.07821471946181,2.35304930753057,0,0.422206515571503,2.27466768141793,1.36074964221213,0.215915916102139,0,2.98041081298238,5.51858751240339,1.52925763827023,0.831076008928724,2.46262230194396,0,0,0,0.656029291399411,0,0.309123034943167,0,0.082509499920588,1.14853107599234,1.30012049207304,1.6068392984416,1.45006077438183,3.08097234229289,1.99554777143968,0.964856007391714,3.11518710117994,3.77043404176994,2.13066568540252,0.356128142586949,0.330569830721956,0.384380134730212,1.53135254993501,0.30347334256665,1.39453664789186,0.94443704049192,2.0911118104818,2.46426864140871,5.32306030317022,1.73986598415015,0.9266210955196,0,0.744316738719335,2.21465597303108,0.762520775695299,7.67693373934002,5.1352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| |||
|short_description=p4@CACNB3 | |||
}} |
Latest revision as of 14:25, 18 September 2015
Short description: | p4@CACNB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CACNB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000549226_5end |
EntrezGene: | CACNB3 |
HGNC: | 1403 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.53e-18 | 58 |
myoblast | 1.53e-18 | 58 |
multi-potent skeletal muscle stem cell | 1.53e-18 | 58 |
muscle cell | 1.40e-16 | 55 |
smooth muscle cell | 2.45e-15 | 43 |
smooth muscle myoblast | 2.45e-15 | 43 |
fibroblast | 8.99e-15 | 76 |
electrically responsive cell | 1.34e-13 | 61 |
electrically active cell | 1.34e-13 | 61 |
mesodermal cell | 3.08e-10 | 121 |
multi fate stem cell | 8.81e-09 | 427 |
somatic stem cell | 3.62e-08 | 433 |
skin fibroblast | 5.87e-08 | 23 |
stem cell | 2.15e-07 | 441 |
vascular associated smooth muscle cell | 3.48e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.87e-19 | 78 |
somite | 1.96e-18 | 71 |
presomitic mesoderm | 1.96e-18 | 71 |
presumptive segmental plate | 1.96e-18 | 71 |
dermomyotome | 1.96e-18 | 71 |
trunk paraxial mesoderm | 1.96e-18 | 71 |
paraxial mesoderm | 6.12e-18 | 72 |
presumptive paraxial mesoderm | 6.12e-18 | 72 |
dense mesenchyme tissue | 1.85e-17 | 73 |
multilaminar epithelium | 8.94e-17 | 83 |
skeletal muscle tissue | 2.30e-16 | 62 |
striated muscle tissue | 2.30e-16 | 62 |
myotome | 2.30e-16 | 62 |
muscle tissue | 3.72e-16 | 64 |
musculature | 3.72e-16 | 64 |
musculature of body | 3.72e-16 | 64 |
mesenchyme | 2.04e-13 | 160 |
entire embryonic mesenchyme | 2.04e-13 | 160 |
trunk mesenchyme | 1.35e-12 | 122 |
trunk | 6.40e-09 | 199 |
mesoderm | 2.58e-07 | 315 |
mesoderm-derived structure | 2.58e-07 | 315 |
presumptive mesoderm | 2.58e-07 | 315 |
surface structure | 3.17e-07 | 99 |
unilaminar epithelium | 3.58e-07 | 148 |
artery | 4.69e-07 | 42 |
arterial blood vessel | 4.69e-07 | 42 |
arterial system | 4.69e-07 | 42 |
musculoskeletal system | 6.95e-07 | 167 |
systemic artery | 8.69e-07 | 33 |
systemic arterial system | 8.69e-07 | 33 |
integument | 9.93e-07 | 46 |
integumental system | 9.93e-07 | 46 |