FFCP PHASE1:Hg19::chr19:14530185..14530199,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10212 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17821 | |||
|TSSclassifier=strong | |||
|UniProt=O00148 | |||
|association_with_transcript=0bp_to_NM_005804_5end | |||
|cluster_id=chr19:14530185..14530199,- | |||
|coexpression_cluster_id=C8 | |||
|description=CAGE_peak_3_at_DDX39A_5end | |||
|id=chr19:14530185..14530199,- | |||
|ontology_enrichment_celltype=CL:0000012!2.96e-25!682;CL:0000548!2.60e-24!679;CL:0000004!2.60e-24!679;CL:0000255!2.60e-24!679;CL:0000063!9.61e-22!578;CL:0000003!2.47e-20!722;CL:0000988!1.55e-18!182;CL:0000037!5.44e-18!172;CL:0000566!5.44e-18!172;CL:0002032!2.49e-16!165;CL:0000837!2.49e-16!165;CL:0000860!2.45e-14!45;CL:0000738!2.18e-13!140;CL:0002031!2.92e-13!124;CL:0002057!4.56e-13!42;CL:0002087!2.57e-12!119;CL:0000763!7.05e-12!112;CL:0000049!7.05e-12!112;CL:0000144!2.82e-11!625;CL:0000219!3.87e-10!390;CL:0000557!4.03e-09!71;CL:0000839!1.04e-08!70;CL:0002009!3.36e-08!65;CL:0002371!4.01e-08!591;CL:0000766!8.90e-08!76;CL:0000134!1.44e-07!358;CL:0002194!2.07e-07!63;CL:0000576!2.07e-07!63;CL:0000040!2.07e-07!63;CL:0000559!2.07e-07!63;CL:0000066!3.52e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.80e-11;33!CL:0002057;2.80e-11;33!CL:0000576;3.06e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.13e-17,177;CL:0000037,2.75e-17,168;CL:0002032,1.22e-15,161;CL:0000837,1.22e-15,161;CL:0000860,4.42e-13,42;CL:0002057,4.42e-13,42;CL:0000738,1.02e-12,136;CL:0002031,1.16e-12,120;CL:0002087,8.02e-12,115;CL:0000763,2.76e-11,108;CL:0000049,2.76e-11,108;CL:0000219,2.78e-09,386;CL:0000473,2.84e-09,48;CL:0000234,2.84e-09,48;CL:0000557,1.32e-08,67;CL:0000839,3.40e-08,66;CL:0002009,8.62e-08,61;CL:0000766,2.67e-07,72;CL:0002194,5.33e-07,59;CL:0000576,5.33e-07,59;CL:0000040,5.33e-07,59;CL:0000559,5.33e-07,59;CL:0000066,5.59e-07,253;CL:0000134,7.78e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.35e-10;42 | |||
|ontology_enrichment_disease=DOID:162!3.37e-24!235;DOID:14566!1.13e-22!239;DOID:0050687!2.71e-15!143;DOID:305!1.05e-12!106;DOID:0050686!4.31e-12!137;DOID:2531!4.83e-09!51;DOID:0060083!4.83e-09!51;DOID:1240!7.61e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.77e-24,235;DOID:14566,1.27e-22,239;DOID:0050687,2.82e-15,143;DOID:305,1.10e-12,106;DOID:0050686,3.85e-12,137;DOID:2531,4.13e-09,51;DOID:0060083,4.13e-09,51;DOID:1240,6.82e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001474!1.45e-09!86;UBERON:0002371!4.03e-09!80;UBERON:0002390!5.65e-08!102;UBERON:0003061!5.65e-08!102;UBERON:0004765!2.39e-07!101;UBERON:0001434!2.39e-07!101;UBERON:0002384!3.16e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.59e-09,82;UBERON:0002371,9.95e-09,76;UBERON:0002390,9.53e-08,98;UBERON:0003061,9.53e-08,98;UBERON:0002405,2.96e-07,93;UBERON:0004765,2.96e-07,90 | |||
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| |||
|short_description=p3@DDX39A | |||
}} |
Latest revision as of 04:50, 16 September 2015
Short description: | p3@DDX39A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DDX39A_5end |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | 0bp_to_NM_005804_5end |
EntrezGene: | DDX39A |
HGNC: | 17821 |
UniProt: | O00148 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.13e-17 | 177 |
hematopoietic stem cell | 2.75e-17 | 168 |
hematopoietic oligopotent progenitor cell | 1.22e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.22e-15 | 161 |
classical monocyte | 4.42e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.42e-13 | 42 |
leukocyte | 1.02e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 1.16e-12 | 120 |
nongranular leukocyte | 8.02e-12 | 115 |
myeloid cell | 2.76e-11 | 108 |
common myeloid progenitor | 2.76e-11 | 108 |
motile cell | 2.78e-09 | 386 |
defensive cell | 2.84e-09 | 48 |
phagocyte | 2.84e-09 | 48 |
granulocyte monocyte progenitor cell | 1.32e-08 | 67 |
myeloid lineage restricted progenitor cell | 3.40e-08 | 66 |
macrophage dendritic cell progenitor | 8.62e-08 | 61 |
myeloid leukocyte | 2.67e-07 | 72 |
monopoietic cell | 5.33e-07 | 59 |
monocyte | 5.33e-07 | 59 |
monoblast | 5.33e-07 | 59 |
promonocyte | 5.33e-07 | 59 |
epithelial cell | 5.59e-07 | 253 |
mesenchymal cell | 7.78e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone element | 3.59e-09 | 82 |
bone marrow | 9.95e-09 | 76 |
hematopoietic system | 9.53e-08 | 98 |
blood island | 9.53e-08 | 98 |
immune system | 2.96e-07 | 93 |
skeletal element | 2.96e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.77e-24 | 235 |
disease of cellular proliferation | 1.27e-22 | 239 |
cell type cancer | 2.82e-15 | 143 |
carcinoma | 1.10e-12 | 106 |
organ system cancer | 3.85e-12 | 137 |
hematologic cancer | 4.13e-09 | 51 |
immune system cancer | 4.13e-09 | 51 |
leukemia | 6.82e-07 | 39 |