FFCP PHASE1:Hg19::chr8:70983476..70983493,-: Difference between revisions
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|id=chr8:70983476..70983493,-
|short_description=p1@PRDM14
|description=CAGE_peak_1_at_PRDM14_5end
|association_with_transcript=68bp_to_ENST00000276594,NM_024504,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=63978 | |EntrezGene=63978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14001 | |HGNC=14001 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZV8 | |UniProt=Q9GZV8 | ||
|association_with_transcript=68bp_to_ENST00000276594,NM_024504,uc003xym.2_5end | |||
|cluster_id=chr8:70983476..70983493,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_PRDM14_5end | |||
|id=chr8:70983476..70983493,- | |||
|ontology_enrichment_celltype=CL:0002322!1.10e-61!5;CL:0000039!6.82e-29!7;CL:0000586!6.82e-29!7;CL:0000540!3.41e-19!6;CL:0000031!3.41e-19!6;CL:0000404!3.41e-19!6;CL:0000047!1.47e-14!8;CL:0000148!9.41e-12!10;CL:0000541!9.41e-12!10;CL:0000147!1.49e-08!14;CL:0000133!5.58e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.30e-65;5!CL:0000039;1.09e-30;7!CL:0000586;1.09e-30;7!CL:0002321;5.40e-22;15!CL:0000540;2.27e-20;6!CL:0000404;2.27e-20;6!CL:0000148;1.78e-12;10!CL:0000147;4.49e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.39e-65,5;CL:0000039,1.05e-30,7;CL:0000586,1.05e-30,7;CL:0000540,2.27e-20,6;CL:0000031,2.27e-20,6;CL:0000404,2.27e-20,6;CL:0000047,1.90e-15,8;CL:0000148,1.82e-12,10;CL:0000541,1.82e-12,10;CL:0000147,4.55e-09,14;CL:0000133,1.79e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.66e-33;10!UBERON:0005564;2.66e-33;10!CL:0000031;2.27e-20;6 | |||
|ontology_enrichment_disease=DOID:3095!3.93e-20!22;DOID:2994!3.93e-20!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.92e-21;22!DOID:2994;1.92e-21;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.89e-21,22;DOID:2994,1.89e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.47e-25!8;UBERON:0003135!1.59e-18!11;UBERON:0000991!6.08e-15!21;UBERON:0009196!6.08e-15!21;UBERON:0009117!6.08e-15!21;UBERON:0005564!6.08e-15!21;UBERON:0004176!2.91e-14!22;UBERON:0003101!2.14e-09!22;UBERON:0000079!2.14e-09!22;UBERON:0002323!8.90e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.58e-27;8!UBERON:0003135;1.12e-19;11!UBERON:0000991;6.65e-16;21!UBERON:0000922;3.33e-13;49!UBERON:0003101;5.51e-10;22!UBERON:0000079;5.51e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.37e-27,8;UBERON:0003135,1.09e-19,11;UBERON:0000991,6.55e-16,21;UBERON:0009196,6.55e-16,21;UBERON:0009117,6.55e-16,21;UBERON:0005564,6.55e-16,21;UBERON:0004176,3.45e-15,22;UBERON:0003101,5.44e-10,22;UBERON:0000079,5.44e-10,22;UBERON:0002323,3.10e-07,46;UBERON:0003133,6.27e-07,48;UBERON:0004458,8.73e-07,49 | |||
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|short_description=p1@PRDM14 | |||
}} | }} |
Latest revision as of 23:53, 18 September 2015
Short description: | p1@PRDM14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDM14_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 68bp_to_ENST00000276594, NM_024504, uc003xym.2_5end |
EntrezGene: | PRDM14 |
HGNC: | 14001 |
UniProt: | Q9GZV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.39e-65 | 5 |
germ line cell | 1.05e-30 | 7 |
germ cell | 1.05e-30 | 7 |
neuron | 2.27e-20 | 6 |
neuroblast | 2.27e-20 | 6 |
electrically signaling cell | 2.27e-20 | 6 |
neuronal stem cell | 1.90e-15 | 8 |
melanocyte | 1.82e-12 | 10 |
melanoblast | 1.82e-12 | 10 |
pigment cell | 4.55e-09 | 14 |
neurectodermal cell | 1.79e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 6.37e-27 | 8 |
male reproductive organ | 1.09e-19 | 11 |
gonad | 6.55e-16 | 21 |
indifferent external genitalia | 6.55e-16 | 21 |
indifferent gonad | 6.55e-16 | 21 |
gonad primordium | 6.55e-16 | 21 |
external genitalia | 3.45e-15 | 22 |
male organism | 5.44e-10 | 22 |
male reproductive system | 5.44e-10 | 22 |
body cavity | 3.10e-07 | 46 |
reproductive organ | 6.27e-07 | 48 |
body cavity or lining | 8.73e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.89e-21 | 22 |
germ cell cancer | 1.89e-21 | 22 |