FFCP PHASE1:Hg19::chr1:34630978..34630987,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114784 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19290 | |||
|TSSclassifier=strong | |||
|UniProt=E7EUA6,Q53TY4 | |||
|association_with_transcript=-103bp_to_ENST00000373381,uc001bxm.1_5end | |||
|cluster_id=chr1:34630978..34630987,- | |||
|coexpression_cluster_id=C1856 | |||
|description=CAGE_peak_5_at_CSMD2_5end | |||
|id=chr1:34630978..34630987,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000346;1.42e-15;3!CL:1000428;1.42e-15;3!CL:0002559;1.01e-09;5!CL:0000047;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,1.32e-15,3;CL:1000428,1.32e-15,3;CL:0002559,9.70e-10,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;2.60e-12;1!DOID:3149;2.60e-12;1!DOID:3451;8.76e-07;2!DOID:4159;8.76e-07;2!DOID:0060122;8.76e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,4.81e-12,1;DOID:3149,4.81e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.42e-35!57;UBERON:0005068!2.42e-35!57;UBERON:0006241!2.42e-35!57;UBERON:0007135!2.42e-35!57;UBERON:0001017!4.87e-34!82;UBERON:0005743!2.12e-33!86;UBERON:0002020!1.34e-30!34;UBERON:0003528!1.34e-30!34;UBERON:0001893!2.70e-30!34;UBERON:0002616!1.80e-29!59;UBERON:0000073!5.24e-29!94;UBERON:0001016!5.24e-29!94;UBERON:0002791!6.73e-29!33;UBERON:0000955!2.52e-28!69;UBERON:0006238!2.52e-28!69;UBERON:0002780!3.21e-28!41;UBERON:0001890!3.21e-28!41;UBERON:0006240!3.21e-28!41;UBERON:0001869!1.43e-27!32;UBERON:0003080!2.32e-27!42;UBERON:0002346!2.75e-25!90;UBERON:0002619!1.51e-23!22;UBERON:0001950!4.63e-23!20;UBERON:0000956!1.83e-22!25;UBERON:0000203!1.83e-22!25;UBERON:0003075!2.39e-22!86;UBERON:0007284!2.39e-22!86;UBERON:0007023!7.11e-20!115;UBERON:0000924!6.02e-19!173;UBERON:0006601!6.02e-19!173;UBERON:0003056!1.13e-17!61;UBERON:0004121!9.36e-17!169;UBERON:0000033!7.04e-15!123;UBERON:0000153!1.12e-13!129;UBERON:0007811!1.12e-13!129;UBERON:0000475!2.80e-10!365;UBERON:0001872!8.52e-10!5;UBERON:0002308!1.54e-09!9;UBERON:0000125!1.54e-09!9;UBERON:0003076!4.87e-09!15;UBERON:0003057!4.87e-09!15;UBERON:0000025!1.00e-08!194;UBERON:0001871!2.30e-08!7;UBERON:0002298!2.53e-08!8;UBERON:0004111!9.37e-08!241;UBERON:0000200!2.14e-07!6;UBERON:0002420!3.61e-07!9;UBERON:0007245!3.61e-07!9;UBERON:0010009!3.61e-07!9;UBERON:0010011!3.61e-07!9;UBERON:0000454!3.61e-07!9;UBERON:0004733!5.03e-07!12;UBERON:0002028!5.03e-07!12;UBERON:0007277!5.03e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.42e-15;3!UBERON:0001992;1.42e-15;3!UBERON:0002073;1.01e-09;5!UBERON:0002619;4.60e-08;22!UBERON:0000956;3.76e-07;25!UBERON:0000203;3.76e-07;25!UBERON:0000922;5.27e-07;49!UBERON:0001954;8.76e-07;2!UBERON:0003022;8.76e-07;2!UBERON:0002421;8.76e-07;2!UBERON:0002600;8.76e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.32e-15,3;UBERON:0001992,1.32e-15,3;UBERON:0002073,9.70e-10,5;UBERON:0005086,9.70e-10,5;UBERON:0002619,4.73e-08,22;UBERON:0000956,3.86e-07,25;UBERON:0000203,3.86e-07,25;UBERON:0001954,9.54e-07,2;UBERON:0003022,9.54e-07,2;UBERON:0002421,9.54e-07,2;UBERON:0002600,9.54e-07,2 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4351170855109,0,0.211931901159562,0.600182192168805,0,0.515281080091258,0,0.843881661206331,0.0974370051611986,0.504867548488229,0,0,1.77504796258307,0.302256294682921,0,0,0,0,0.121973706129595,0.265059536642971,0,0.207322110030741,0,0,0,1.28648187638577,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,1.50719688529793,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0.202910376962704,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0,3.95529298144223,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,3.99227596002388,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0.331737779793674,0.295547618953547,0,0,0.557694977114413,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0.394584402849391,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443175571691151,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22583065500418,0,0.275078873194468,0.415440338029185,0,0,0.425246896606173,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0.979762080328227,0,0,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0.106787412567695,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0.122026264901963,0.3755727921195,0.573409195690071,0.332787154610557,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0.414706207840855,0.265841714557995,0,0.150257608997218,1.14241563650639,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0.308801447160972,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91317428091515,0.123935764259002,0,0,0,0,0,0,0.578063025868136,0,0.638535436228605,0.41023272848151,2.01657356977374,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0.781078098613847,0.206686796501184,0.507326481551255,5.4697480901822,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0.471346769748006,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,1.18818560130834,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.271965960763659,4.36350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.413731983447581,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0.179650404213174,0,0.122241444182866,0,0,0,0 | |||
|short_description=p5@CSMD2 | |||
}} |
Latest revision as of 17:38, 17 September 2015
Short description: | p5@CSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CSMD2_5end |
Coexpression cluster: | C1856_brain_parietal_temporal_occipital_duodenum_Fibroblast_neuroectodermal |
Association with transcript: | -103bp_to_ENST00000373381, uc001bxm.1_5end |
EntrezGene: | CSMD2 |
HGNC: | 19290 |
UniProt: | E7EUA6Q53TY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 1.32e-15 | 3 |
stem cell of epidermis | 1.32e-15 | 3 |
hair follicle cell | 9.70e-10 | 5 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.32e-15 | 3 |
papillary layer of dermis | 1.32e-15 | 3 |
hair follicle | 9.70e-10 | 5 |
hair follicle placode | 9.70e-10 | 5 |
regional part of cerebral cortex | 4.73e-08 | 22 |
cerebral cortex | 3.86e-07 | 25 |
pallium | 3.86e-07 | 25 |
Ammon's horn | 9.54e-07 | 2 |
lobe parts of cerebral cortex | 9.54e-07 | 2 |
hippocampal formation | 9.54e-07 | 2 |
limbic lobe | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.81e-12 | 1 |
keratoacanthoma | 4.81e-12 | 1 |