FFCP PHASE1:Hg19::chr20:35176474..35176493,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr20:35176474..35176493,+ | |||
|coexpression_cluster_id=C384 | |||
|description=CAGE_peak_at_chr20:35176474..35176493,+ | |||
|id=chr20:35176474..35176493,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.12e-16!180;CL:0000192!2.35e-11!42;CL:0000514!2.35e-11!42;CL:0000183!4.91e-11!59;CL:0000680!1.34e-10!57;CL:0000056!1.34e-10!57;CL:0000355!1.34e-10!57;CL:0000187!1.04e-09!54;CL:0000057!1.91e-09!75;CL:0000393!8.52e-09!60;CL:0000211!8.52e-09!60;CL:0000136!5.85e-08!15;CL:0000359!9.80e-08!32;CL:0000222!2.31e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.03e-09;13!CL:0000359;4.40e-08;32!CL:0002334;8.12e-08;12!CL:0000192;2.11e-07;43!CL:0000134;8.74e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.24e-10,43;CL:0000514,2.24e-10,43;CL:0000136,2.91e-10,15;CL:0000359,2.54e-08,32;CL:0002334,5.53e-08,12;CL:0000187,1.82e-07,55;CL:0000680,2.09e-07,58;CL:0000056,2.09e-07,58;CL:0000355,2.09e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;2.11e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.56e-13!143;UBERON:0002385!2.14e-10!63;UBERON:0001015!2.14e-10!63;UBERON:0000383!2.14e-10!63;UBERON:0002100!5.69e-10!216;UBERON:0004872!1.56e-09!84;UBERON:0001134!2.18e-09!61;UBERON:0002036!2.18e-09!61;UBERON:0003082!2.18e-09!61;UBERON:0000914!2.21e-09!83;UBERON:0002329!2.21e-09!83;UBERON:0003077!2.21e-09!83;UBERON:0003059!2.21e-09!83;UBERON:0007282!2.21e-09!83;UBERON:0009618!2.21e-09!83;UBERON:0007285!2.21e-09!83;UBERON:0004290!6.33e-09!70;UBERON:0000486!3.45e-08!82;UBERON:0003914!3.51e-08!118;UBERON:0001135!4.00e-08!15;UBERON:0003104!9.36e-08!238;UBERON:0009142!9.36e-08!238;UBERON:0001981!1.24e-07!60;UBERON:0007500!1.24e-07!60;UBERON:0004537!1.24e-07!60;UBERON:0006965!1.24e-07!60;UBERON:0000926!4.23e-07!448;UBERON:0004120!4.23e-07!448;UBERON:0006603!4.23e-07!448;UBERON:0000468!7.79e-07!659;UBERON:0000481!8.24e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.14e-09;6!UBERON:0002358;1.14e-09;6!UBERON:0003684;1.14e-09;6!UBERON:0001178;1.14e-09;6!UBERON:0004457;7.59e-08;9!UBERON:0000042;7.59e-08;9!UBERON:0001135;8.56e-08;15!UBERON:0007100;2.24e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,8.56e-10,315;UBERON:0004120,8.56e-10,315;UBERON:0006603,8.56e-10,315;UBERON:0003688,1.22e-09,6;UBERON:0002358,1.22e-09,6;UBERON:0003684,1.22e-09,6;UBERON:0001178,1.22e-09,6;UBERON:0005256,2.65e-08,122;UBERON:0001135,6.03e-08,15;UBERON:0003104,9.95e-08,160;UBERON:0009142,9.95e-08,160;UBERON:0002385,1.07e-07,64;UBERON:0001015,1.07e-07,64;UBERON:0000383,1.07e-07,64;UBERON:0004872,1.51e-07,83;UBERON:0003101,9.85e-07,22;UBERON:0000079,9.85e-07,22 | |||
|phase1_expression=7.08545679155171,11.3473277662221,13.3906683891173,9.00659685178174,15.1966772105278,3.48935409640147,22.796989035148,1.26343974685366,1.04474251279935,0.737201809504527,1.39560233594486,0,0.527533956456907,0,0,2.6893005858071,1.20538905604795,2.92124036154949,1.46379839637152,0,0.408001382488506,0.626909442956176,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,2.53007406669196,2.00535164254356,3.33146993609895,0,0,0.472674085820339,0.665188192387692,0.966182642624386,0.916853528483988,0,0,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0,0,0.838998872419812,0,0,0,0,0,0.402829317109147,0,1.22031028774085,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,2.48485975847659,5.82500353657067,0.529636723252875,0.573673241497627,2.4826786753885,2.80338800071154,0,11.1000396787722,0,0.404132016209064,0.163461903113459,0.605429710579726,0,0,1.24864030732128,0,0.597794722207204,0.117434498643765,0.485618833104395,0,0.204154171254893,0.368502951935304,0.309977343527296,3.56400857184616,12.857880322485,0,0,0.168336113954066,0.125118519871964,0,2.63386572528503,7.66219489497549,6.46023653298366,0.340296549480063,0.179389635688862,1.49490172172997,0.635795703478686,0.300091096084402,1.75189299705346,1.03056216018252,2.60563598864226,0,2.24105111870757,0.757301322732344,1.28869858099219,2.58633690910099,0.710019185033229,3.62707553619505,0.847802961552438,0,0,0,0.121973706129595,0.265059536642971,0.348581828608555,0.310983165046111,0.504641701751257,0.36497735907583,0,1.92972281457866,0,0.464367928031979,0,0.236613600079688,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0.738155454624648,1.40241773803446,0,4.41026134156626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.821860859650752,0.144366447761074,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0.839910640994298,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571652865261156,0.336393253036082,0.87192013766656,0.2933531432838,1.93907573636667,7.15312891703765,0,11.1694008965646,4.16029747645464,0,0,0.266422179016099,0.857867961948885,1.08524321078289,0.823240336780769,0,0.710783897485092,0,1.80863626235752,0,4.29883862082845,0,0,0,2.39624855491583,9.18895486672911,0,0.868687840005475,0.821905290201534,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0,3.74347550755453,5.17444067511769,2.36553622550902,1.87426263988341,3.00946099727719,6.82222512167955,0,0.664225598535437,0.921845842708516,5.12613325361689,0.979005787313703,1.02943027143257,0,0,0,0,0,0.604780586659361,7.44323423456331,0.767309866440312,5.61320188866147,6.66323576129645,4.09365799253363,25.7366273829772,5.93672265779964,1.54209693802656,1.77561725313127,0.9033987161519,0,1.62694529843943,0.966875596732978,0.601519410909855,0.276242966807689,5.0518357192427,4.91646153618136,13.1124414959424,0,0.0770153371044148,0.784349769176855,0,0.316654886678627,0,0.170093705276516,0,1.54227252690289,0.541892875087706,4.01351819083883,0,0,0.447749509444357,0,0,0,2.29610251989794,0,0.721287081534056,0,0,0.574265537996172,1.95018073810956,8.03419649220798,0.676695028044854,0,0.15350367472613,0,0.107420244868274,0.145016693914229,0.255679882248303,2.04773681987496,0.165284915360978,1.15314040419064,0,0.10115778085555,4.18360994367557,2.20368642781448,0.6970372701606,0.308033580176089,2.66153015158511,1.73986598415015,2.22389062924704,0.429374660225974,0,1.58189712359363,1.5250415513906,1.535386747868,0.42793898803392,0.636406495851874,0,0.899362287916574,1.64722217841633,0.706874414074119,1.01091240786658,0,1.68503382495592,0.48763373908959,1.70599442741899,0,2.72999822815972,3.95935209470396,0,0,0.66343897524122,3.5076070820301,3.47265320560013,1.9676842561399,2.43492452355245,1.239293992399,1.40847801266121,0.717056761020258,0.589494246078727,4.63672366925625,0.354761064070598,2.74439925886963,0.658589785919804,0,0.349934720244983,0.0962221127255121,0,0,0.659006605437454,1.72202149068492,0,0.443430153536676,0,0.507447609232169,0,0,0,0,0.648473311192717,0,0.79312517629427,0.640944426764839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.485442086998054,0,0,0,0,0,0,0,0.556543525114529,0,0,7.57142355354065,1.38141957765574,0,0,0,3.11039587661807,0,0,0,14.5992240342662,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.87754158861589,0,0.278847488557207,3.69361240818226,1.13942055847001,0.23056390438806,0.179515288819544,0.217294743844016,0,3.48070854927077,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,3.98104772431402,5.30745387020035,5.49927130440263,0,0,0,0,0,0,0,0,0,2.76209081994573,1.20990716048664,0,0.63186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,2.79562669187248,0.343972064943233,0,0.0730893170861856,0,9.1169675499114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| |||
|short_description=p@chr20:35176474..35176493,+ | |||
}} |
Latest revision as of 13:36, 28 July 2015
Short description: | p@chr20:35176474..35176493, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35176474..35176493, + |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.24e-10 | 43 |
smooth muscle myoblast | 2.24e-10 | 43 |
fat cell | 2.91e-10 | 15 |
vascular associated smooth muscle cell | 2.54e-08 | 32 |
preadipocyte | 5.53e-08 | 12 |
muscle cell | 1.82e-07 | 55 |
muscle precursor cell | 2.09e-07 | 58 |
myoblast | 2.09e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.09e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 8.56e-10 | 315 |
mesoderm-derived structure | 8.56e-10 | 315 |
presumptive mesoderm | 8.56e-10 | 315 |
omentum | 1.22e-09 | 6 |
peritoneum | 1.22e-09 | 6 |
abdominal cavity | 1.22e-09 | 6 |
visceral peritoneum | 1.22e-09 | 6 |
trunk mesenchyme | 2.65e-08 | 122 |
smooth muscle tissue | 6.03e-08 | 15 |
mesenchyme | 9.95e-08 | 160 |
entire embryonic mesenchyme | 9.95e-08 | 160 |
muscle tissue | 1.07e-07 | 64 |
musculature | 1.07e-07 | 64 |
musculature of body | 1.07e-07 | 64 |
splanchnic layer of lateral plate mesoderm | 1.51e-07 | 83 |
male organism | 9.85e-07 | 22 |
male reproductive system | 9.85e-07 | 22 |