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FFCP PHASE1:Hg19::chr2:45169905..45169915,+: Difference between revisions

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{{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C573|description=CAGE_peak_at_chr2:45169905..45169915,+|id=chr2:45169905..45169915,+|ontology_enrichment_celltype=CL:0002586!1.68e-11!3;CL:0000064!6.71e-11!3;CL:0005012!6.71e-11!3;CL:0000067!6.71e-11!3;CL:0002304!6.71e-11!3;CL:0000149!1.03e-08!4;CL:0000147!2.93e-08!14;CL:0000075!9.04e-07!27|ontology_enrichment_celltype_v019=CL:0002586;4.83e-30;3!CL:0000306;5.14e-23;4!CL:0002222;5.14e-23;4!CL:0002224;5.14e-23;4!CL:0000149;8.02e-23;4!CL:0000147;3.23e-07;14|ontology_enrichment_celltype_v019_2=CL:0002586,6.50e-30,3;CL:0000306,4.11e-23,4;CL:0002222,4.11e-23,4;CL:0002224,4.11e-23,4;CL:0000149,1.00e-22,4;CL:0000147,3.44e-07,14|ontology_enrichment_development_v019=UBERON:0010122;2.74e-12;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5409;7.07e-07;4|ontology_enrichment_disease_v019_2=DOID:5409,7.27e-07,4|ontology_enrichment_uberon=UBERON:0003056!2.69e-35!61;UBERON:0002346!4.40e-29!90;UBERON:0003075!1.00e-26!86;UBERON:0007284!1.00e-26!86;UBERON:0007625!3.00e-24!11;UBERON:0000970!1.36e-22!20;UBERON:0002104!2.23e-21!21;UBERON:0000019!5.94e-20!19;UBERON:0000047!5.94e-20!19;UBERON:0004088!5.94e-20!19;UBERON:0003072!5.94e-20!19;UBERON:0003071!5.94e-20!19;UBERON:0004128!5.94e-20!19;UBERON:0000020!2.89e-19!23;UBERON:0000073!3.44e-19!94;UBERON:0001016!3.44e-19!94;UBERON:0002780!2.03e-18!41;UBERON:0001890!2.03e-18!41;UBERON:0006240!2.03e-18!41;UBERON:0001032!2.42e-18!24;UBERON:0004456!2.42e-18!24;UBERON:0003080!6.84e-18!42;UBERON:0000153!8.24e-18!129;UBERON:0007811!8.24e-18!129;UBERON:0001456!8.29e-18!21;UBERON:0000966!8.99e-18!5;UBERON:0005388!8.99e-18!5;UBERON:0001802!8.99e-18!5;UBERON:0000033!1.19e-17!123;UBERON:0000924!2.49e-17!173;UBERON:0006601!2.49e-17!173;UBERON:0005743!4.92e-17!86;UBERON:0004121!1.19e-15!169;UBERON:0002616!6.62e-15!59;UBERON:0000369!6.01e-14!4;UBERON:0002435!6.01e-14!4;UBERON:0000204!6.01e-14!4;UBERON:0010082!6.01e-14!4;UBERON:0000488!1.20e-13!4;UBERON:0000955!2.09e-13!69;UBERON:0006238!2.09e-13!69;UBERON:0002420!5.45e-13!9;UBERON:0007245!5.45e-13!9;UBERON:0010009!5.45e-13!9;UBERON:0010011!5.45e-13!9;UBERON:0000454!5.45e-13!9;UBERON:0005085!3.36e-12!29;UBERON:0001049!3.55e-12!57;UBERON:0005068!3.55e-12!57;UBERON:0006241!3.55e-12!57;UBERON:0007135!3.55e-12!57;UBERON:0009663!5.80e-12!7;UBERON:0001894!6.07e-12!7;UBERON:0006222!6.07e-12!7;UBERON:0001017!8.28e-12!82;UBERON:0001781!1.68e-11!3;UBERON:0001782!1.68e-11!3;UBERON:0005424!1.68e-11!3;UBERON:0005383!1.74e-11!3;UBERON:0005382!1.74e-11!3;UBERON:0002791!3.45e-11!33;UBERON:0001778!6.71e-11!3;UBERON:0001775!6.71e-11!3;UBERON:0001893!8.57e-11!34;UBERON:0002200!3.14e-10!11;UBERON:0006876!3.14e-10!11;UBERON:0001869!8.61e-10!32;UBERON:0002308!3.20e-09!9;UBERON:0000125!3.20e-09!9;UBERON:0002203!4.18e-09!6;UBERON:0001768!4.18e-09!6;UBERON:0002020!4.23e-09!34;UBERON:0003528!4.23e-09!34;UBERON:0001801!2.89e-08!14;UBERON:0000007!3.31e-08!2;UBERON:0001873!3.43e-08!2;UBERON:0010122!3.43e-08!2;UBERON:0001870!1.56e-07!2;UBERON:0001897!2.23e-07!2|ontology_enrichment_uberon_v019=UBERON:0007625;3.08e-32;11!UBERON:0001781;4.83e-30;3!UBERON:0001782;4.83e-30;3!UBERON:0005383;4.83e-30;3!UBERON:0005382;4.83e-30;3!UBERON:0000970;1.51e-27;20!UBERON:0002104;2.96e-26;21!UBERON:0000020;5.30e-24;23!UBERON:0001874;3.67e-23;1!UBERON:0001032;5.13e-23;24!UBERON:0004456;5.13e-23;24!UBERON:0010077;5.14e-23;4!UBERON:0005389;5.14e-23;4!UBERON:0000484;5.14e-23;4!UBERON:0000965;5.14e-23;4!UBERON:0001803;5.14e-23;4!UBERON:0000369;8.02e-23;4!UBERON:0002435;8.02e-23;4!UBERON:0000204;8.02e-23;4!UBERON:0000019;6.67e-19;19!UBERON:0000047;6.67e-19;19!UBERON:0004088;6.67e-19;19!UBERON:0010230;6.67e-19;19!UBERON:0000966;1.77e-18;5!UBERON:0005388;1.77e-18;5!UBERON:0001802;1.77e-18;5!UBERON:0001456;3.77e-17;21!UBERON:0009663;1.69e-13;7!UBERON:0000007;1.48e-12;2!UBERON:0001873;2.74e-12;2!UBERON:0002420;1.02e-10;9!UBERON:0000125;1.02e-10;9!UBERON:0007245;1.02e-10;9!UBERON:0002308;1.02e-10;9!UBERON:0010009;1.02e-10;9!UBERON:0010011;1.02e-10;9!UBERON:0000454;1.02e-10;9!UBERON:0010371;1.12e-10;31!UBERON:0001801;2.85e-07;14!UBERON:0003296;6.50e-07;4!UBERON:0010133;6.50e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0007625,3.08e-32,11;UBERON:0005383,3.59e-30,3;UBERON:0005382,3.59e-30,3;UBERON:0001782,6.50e-30,3;UBERON:0005424,6.50e-30,3;UBERON:0000970,3.21e-26,21;UBERON:0002104,3.21e-26,21;UBERON:0001874,4.10e-23,1;UBERON:0010077,4.11e-23,4;UBERON:0005389,4.11e-23,4;UBERON:0000484,4.11e-23,4;UBERON:0002546,4.11e-23,4;UBERON:0000965,4.11e-23,4;UBERON:0001803,4.11e-23,4;UBERON:0003073,4.11e-23,4;UBERON:0005426,4.11e-23,4;UBERON:0000020,5.50e-23,24;UBERON:0001032,5.50e-23,24;UBERON:0004456,5.50e-23,24;UBERON:0000369,6.42e-23,4;UBERON:0002435,6.42e-23,4;UBERON:0000204,6.42e-23,4;UBERON:0010082,6.42e-23,4;UBERON:0001781,1.00e-22,4;UBERON:0000019,5.55e-18,20;UBERON:0000047,5.55e-18,20;UBERON:0010312,5.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{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=NA
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding
|HGNC=NA
|TSSclassifier=strong
|UniProt=NA
|association_with_transcript=NA
|cluster_id=chr2:45169905..45169915,+
|coexpression_cluster_id=C573
|description=CAGE_peak_at_chr2:45169905..45169915,+
|id=chr2:45169905..45169915,+
|ontology_enrichment_celltype=CL:0002586!1.68e-11!3;CL:0000064!6.71e-11!3;CL:0005012!6.71e-11!3;CL:0000067!6.71e-11!3;CL:0002304!6.71e-11!3;CL:0000149!1.03e-08!4;CL:0000147!2.93e-08!14;CL:0000075!9.04e-07!27
|ontology_enrichment_celltype_v019=CL:0002586;4.83e-30;3!CL:0000306;5.14e-23;4!CL:0002222;5.14e-23;4!CL:0002224;5.14e-23;4!CL:0000149;8.02e-23;4!CL:0000147;3.23e-07;14
|ontology_enrichment_celltype_v019_2=CL:0002586,6.50e-30,3;CL:0000306,4.11e-23,4;CL:0002222,4.11e-23,4;CL:0002224,4.11e-23,4;CL:0000149,1.00e-22,4;CL:0000147,3.44e-07,14
|ontology_enrichment_development_v019=UBERON:0010122;2.74e-12;2
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:5409;7.07e-07;4
|ontology_enrichment_disease_v019_2=DOID:5409,7.27e-07,4
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|short_description=p@chr2:45169905..45169915,+
}}

Latest revision as of 10:25, 29 July 2015

Short description:p@chr2:45169905..45169915, +
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_at_chr2:45169905..45169915, +
Coexpression cluster:C573_Lens_small_retina_Ciliary_Retinal_eye_putamen
Association with transcript: NA
EntrezGene:NA
HGNC: NA
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

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CAGE Expression



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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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