FFCP PHASE1:Mm9::chr5:117959951..117959963,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=123|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:117959951..117959963,+|id=chr5:117959951..117959963,+|ontology_enrichment_celltype=CL:0000791!1.83e-09!9;CL:0000789!1.83e-09!9;CL:0002420!1.83e-09!9;CL:0002419!1.83e-09!9;CL:0000790!1.83e-09!9;CL:0000624!1.25e-07!8;CL:0000084!1.39e-07!11;CL:0000827!1.39e-07!11;CL:0000838!7.03e-07!12|ontology_enrichment_celltype_v019_2=CL:0000791,2.54e-22,9;CL:0000789,2.54e-22,9;CL:0002420,2.54e-22,9;CL:0002419,2.54e-22,9;CL:0000790,2.54e-22,9;CL:0000084,2.70e-18,11;CL:0000827,2.70e-18,11;CL:0000838,8.80e-17,12;CL:0000624,1.53e-16,8;CL:0000542,1.68e-15,13;CL:0000051,1.68e-15,13;CL:0000738,7.10e-12,17;CL:0002087,7.10e-12,17;CL:0000815,1.19e-09,1;CL:0000792,1.19e-09,1;CL:0000625,5.27e-09,1;CL:0002031,4.39e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!3.91e-20!23;UBERON:0000974!3.91e-20!23;UBERON:0004807!3.91e-20!23;UBERON:0005058!3.91e-20!23;UBERON:0003351!3.91e-20!23;UBERON:0009113!3.91e-20!23;UBERON:0003295!3.91e-20!23;UBERON:0009722!3.91e-20!23;UBERON:0005562!3.91e-20!23;UBERON:0007690!3.91e-20!23;UBERON:0004177!7.00e-20!29;UBERON:0000065!1.31e-19!41;UBERON:0006562!3.90e-19!24;UBERON:0003408!3.90e-19!24;UBERON:0001557!3.90e-19!24;UBERON:0001042!3.90e-19!24;UBERON:0008814!3.90e-19!24;UBERON:0009145!3.90e-19!24;UBERON:0001004!5.13e-19!42;UBERON:0002193!1.29e-16!48;UBERON:0000072!1.38e-16!27;UBERON:0002390!5.06e-16!45;UBERON:0003061!5.06e-16!45;UBERON:0000063!6.15e-12!35;UBERON:0002405!9.47e-10!70;UBERON:0005911!1.49e-09!69;UBERON:0005057!1.83e-09!51;UBERON:0001041!1.54e-08!92;UBERON:0000077!8.27e-08!97;UBERON:0003081!9.74e-07!88|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.59e-16,23;UBERON:0000974,1.59e-16,23;UBERON:0004807,1.59e-16,23;UBERON:0005058,1.59e-16,23;UBERON:0003351,1.59e-16,23;UBERON:0009113,1.59e-16,23;UBERON:0003295,1.59e-16,23;UBERON:0009722,1.59e-16,23;UBERON:0005562,1.59e-16,23;UBERON:0007690,1.59e-16,23;UBERON:0006562,7.99e-16,24;UBERON:0003408,7.99e-16,24;UBERON:0001557,7.99e-16,24;UBERON:0001042,7.99e-16,24;UBERON:0008814,7.99e-16,24;UBERON:0009145,7.99e-16,24;UBERON:0000072,4.94e-14,27;UBERON:0004177,4.83e-13,29;UBERON:0005057,4.83e-13,29;UBERON:0000077,9.53e-11,35;UBERON:0007811,1.94e-10,36;UBERON:0002193,3.82e-10,48;UBERON:0002405,3.82e-10,48;UBERON:0000029,9.82e-10,1;UBERON:0001097,9.82e-10,1;UBERON:0003968,9.82e-10,1;UBERON:0001467,9.82e-10,1;UBERON:0000065,4.06e-09,41;UBERON:0001004,6.84e-09,42;UBERON:0000153,1.13e-08,43;UBERON:0002390,2.85e-08,45;UBERON:0003061,2.85e-08,45|phase1_expression=0.160148847104794,0,0,0,0,0,0,2.58246646883153,0,0.468129052643987,0,0,1.36960583944965,1.57356724354195,0,0.202475267389826,0,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17608642603403,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0.335012514883631,0,0,0,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683483523191411,0,0,0,0,0.457556346413045,0.169978429993855,0.279902904647316,0.276399947608848,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0.205421914329655,0,0.358053391334963,0.596044064343795,1.44234539423963,0.738447635872886,1.51449674922221,1.37172251979,1.10908803650525,1.8516997340553,0.769694733122636,0.584384510907845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:117959951..117959963,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=123 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr5:117959951..117959963,+ | |||
|description=CAGE_peak_at_chr5:117959951..117959963,+ | |||
|id=chr5:117959951..117959963,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.83e-09!9;CL:0000789!1.83e-09!9;CL:0002420!1.83e-09!9;CL:0002419!1.83e-09!9;CL:0000790!1.83e-09!9;CL:0000624!1.25e-07!8;CL:0000084!1.39e-07!11;CL:0000827!1.39e-07!11;CL:0000838!7.03e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.54e-22,9;CL:0000789,2.54e-22,9;CL:0002420,2.54e-22,9;CL:0002419,2.54e-22,9;CL:0000790,2.54e-22,9;CL:0000084,2.70e-18,11;CL:0000827,2.70e-18,11;CL:0000838,8.80e-17,12;CL:0000624,1.53e-16,8;CL:0000542,1.68e-15,13;CL:0000051,1.68e-15,13;CL:0000738,7.10e-12,17;CL:0002087,7.10e-12,17;CL:0000815,1.19e-09,1;CL:0000792,1.19e-09,1;CL:0000625,5.27e-09,1;CL:0002031,4.39e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!3.91e-20!23;UBERON:0000974!3.91e-20!23;UBERON:0004807!3.91e-20!23;UBERON:0005058!3.91e-20!23;UBERON:0003351!3.91e-20!23;UBERON:0009113!3.91e-20!23;UBERON:0003295!3.91e-20!23;UBERON:0009722!3.91e-20!23;UBERON:0005562!3.91e-20!23;UBERON:0007690!3.91e-20!23;UBERON:0004177!7.00e-20!29;UBERON:0000065!1.31e-19!41;UBERON:0006562!3.90e-19!24;UBERON:0003408!3.90e-19!24;UBERON:0001557!3.90e-19!24;UBERON:0001042!3.90e-19!24;UBERON:0008814!3.90e-19!24;UBERON:0009145!3.90e-19!24;UBERON:0001004!5.13e-19!42;UBERON:0002193!1.29e-16!48;UBERON:0000072!1.38e-16!27;UBERON:0002390!5.06e-16!45;UBERON:0003061!5.06e-16!45;UBERON:0000063!6.15e-12!35;UBERON:0002405!9.47e-10!70;UBERON:0005911!1.49e-09!69;UBERON:0005057!1.83e-09!51;UBERON:0001041!1.54e-08!92;UBERON:0000077!8.27e-08!97;UBERON:0003081!9.74e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.59e-16,23;UBERON:0000974,1.59e-16,23;UBERON:0004807,1.59e-16,23;UBERON:0005058,1.59e-16,23;UBERON:0003351,1.59e-16,23;UBERON:0009113,1.59e-16,23;UBERON:0003295,1.59e-16,23;UBERON:0009722,1.59e-16,23;UBERON:0005562,1.59e-16,23;UBERON:0007690,1.59e-16,23;UBERON:0006562,7.99e-16,24;UBERON:0003408,7.99e-16,24;UBERON:0001557,7.99e-16,24;UBERON:0001042,7.99e-16,24;UBERON:0008814,7.99e-16,24;UBERON:0009145,7.99e-16,24;UBERON:0000072,4.94e-14,27;UBERON:0004177,4.83e-13,29;UBERON:0005057,4.83e-13,29;UBERON:0000077,9.53e-11,35;UBERON:0007811,1.94e-10,36;UBERON:0002193,3.82e-10,48;UBERON:0002405,3.82e-10,48;UBERON:0000029,9.82e-10,1;UBERON:0001097,9.82e-10,1;UBERON:0003968,9.82e-10,1;UBERON:0001467,9.82e-10,1;UBERON:0000065,4.06e-09,41;UBERON:0001004,6.84e-09,42;UBERON:0000153,1.13e-08,43;UBERON:0002390,2.85e-08,45;UBERON:0003061,2.85e-08,45 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,2.58246646883153,0,0.468129052643987,0,0,1.36960583944965,1.57356724354195,0,0.202475267389826,0,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17608642603403,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,3.36619248741323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0.335012514883631,0,0,0,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683483523191411,0,0,0,0,0.457556346413045,0.169978429993855,0.279902904647316,0.276399947608848,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0.205421914329655,0,0.358053391334963,0.596044064343795,1.44234539423963,0.738447635872886,1.51449674922221,1.37172251979,1.10908803650525,1.8516997340553,0.769694733122636,0.584384510907845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:117959951..117959963,+ | |||
}} |
Latest revision as of 03:46, 6 August 2015
Short description: | p@chr5:117959951..117959963, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:117959951..117959963, + |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.54e-22 | 9 |
alpha-beta T cell | 2.54e-22 | 9 |
immature T cell | 2.54e-22 | 9 |
mature T cell | 2.54e-22 | 9 |
immature alpha-beta T cell | 2.54e-22 | 9 |
T cell | 2.70e-18 | 11 |
pro-T cell | 2.70e-18 | 11 |
lymphoid lineage restricted progenitor cell | 8.80e-17 | 12 |
CD4-positive, alpha-beta T cell | 1.53e-16 | 8 |
lymphocyte | 1.68e-15 | 13 |
common lymphoid progenitor | 1.68e-15 | 13 |
leukocyte | 7.10e-12 | 17 |
nongranular leukocyte | 7.10e-12 | 17 |
regulatory T cell | 1.19e-09 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.19e-09 | 1 |
CD8-positive, alpha-beta T cell | 5.27e-09 | 1 |
hematopoietic lineage restricted progenitor cell | 4.39e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.59e-16 | 23 |
neck | 1.59e-16 | 23 |
respiratory system epithelium | 1.59e-16 | 23 |
hemolymphoid system gland | 1.59e-16 | 23 |
pharyngeal epithelium | 1.59e-16 | 23 |
thymic region | 1.59e-16 | 23 |
pharyngeal gland | 1.59e-16 | 23 |
entire pharyngeal arch endoderm | 1.59e-16 | 23 |
thymus primordium | 1.59e-16 | 23 |
early pharyngeal endoderm | 1.59e-16 | 23 |
pharynx | 7.99e-16 | 24 |
gland of gut | 7.99e-16 | 24 |
upper respiratory tract | 7.99e-16 | 24 |
chordate pharynx | 7.99e-16 | 24 |
pharyngeal arch system | 7.99e-16 | 24 |
pharyngeal region of foregut | 7.99e-16 | 24 |
segment of respiratory tract | 4.94e-14 | 27 |
hemopoietic organ | 4.83e-13 | 29 |
immune organ | 4.83e-13 | 29 |
mixed endoderm/mesoderm-derived structure | 9.53e-11 | 35 |
craniocervical region | 1.94e-10 | 36 |
hemolymphoid system | 3.82e-10 | 48 |
immune system | 3.82e-10 | 48 |
lymph node | 9.82e-10 | 1 |
axillary lymph node | 9.82e-10 | 1 |
peripheral lymph node | 9.82e-10 | 1 |
shoulder | 9.82e-10 | 1 |
respiratory tract | 4.06e-09 | 41 |
respiratory system | 6.84e-09 | 42 |
anterior region of body | 1.13e-08 | 43 |
hematopoietic system | 2.85e-08 | 45 |
blood island | 2.85e-08 | 45 |