FFCP PHASE1:Mm9::chrX:33428680..33428704,+: Difference between revisions
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{{FFCP|EntrezGene=75974|HGNC=|MCL_coexpression_id=894|UniProt=A2AF47|association_with_transcript=-122bp_to_ENSMUST00000033419,NM_001009947,uc009sxi.1_5end|description=CAGE_peak_3_at_Dock11_5end|id=chrX:33428680..33428704,+|ontology_enrichment_celltype=CL:0000542!1.47e-08!13;CL:0000051!1.47e-08!13;CL:0000838!1.74e-08!12;CL:0000084!7.40e-08!11;CL:0000827!7.40e-08!11;CL:0000791!4.19e-07!9;CL:0000789!4.19e-07!9;CL:0002420!4.19e-07!9;CL:0002419!4.19e-07!9;CL:0000790!4.19e-07!9;CL:0000988!7.15e-07!32;CL:0002032!7.15e-07!32;CL:0000037!7.15e-07!32;CL:0000566!7.15e-07!32;CL:0000837!7.15e-07!32|ontology_enrichment_celltype_v019_2=CL:0000542,6.07e-09,13;CL:0000051,6.07e-09,13;CL:0000838,7.24e-09,12;CL:0000084,3.34e-08,11;CL:0000827,3.34e-08,11;CL:0000988,5.07e-08,32;CL:0002032,5.07e-08,32;CL:0000037,5.07e-08,32;CL:0000837,5.07e-08,32;CL:0000791,2.07e-07,9;CL:0000789,2.07e-07,9;CL:0002420,2.07e-07,9;CL:0002419,2.07e-07,9;CL:0000790,2.07e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!7.12e-10!29;UBERON:0002193!9.15e-09!48;UBERON:0002390!2.47e-08!45;UBERON:0003061!2.47e-08!45;UBERON:0002370!1.90e-07!23;UBERON:0000974!1.90e-07!23;UBERON:0004807!1.90e-07!23;UBERON:0005058!1.90e-07!23;UBERON:0003351!1.90e-07!23;UBERON:0009113!1.90e-07!23;UBERON:0003295!1.90e-07!23;UBERON:0009722!1.90e-07!23;UBERON:0005562!1.90e-07!23;UBERON:0007690!1.90e-07!23;UBERON:0006562!3.16e-07!24;UBERON:0001557!3.16e-07!24;UBERON:0001042!3.16e-07!24;UBERON:0008814!3.16e-07!24;UBERON:0009145!3.16e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.36e-11,29;UBERON:0005057,8.36e-11,29;UBERON:0002193,5.27e-10,48;UBERON:0002405,5.27e-10,48;UBERON:0002390,1.50e-09,45;UBERON:0003061,1.50e-09,45;UBERON:0002370,3.19e-08,23;UBERON:0000974,3.19e-08,23;UBERON:0004807,3.19e-08,23;UBERON:0005058,3.19e-08,23;UBERON:0003351,3.19e-08,23;UBERON:0009113,3.19e-08,23;UBERON:0003295,3.19e-08,23;UBERON:0009722,3.19e-08,23;UBERON:0005562,3.19e-08,23;UBERON:0007690,3.19e-08,23;UBERON:0006562,5.70e-08,24;UBERON:0001557,5.70e-08,24;UBERON:0001042,5.70e-08,24;UBERON:0008814,5.70e-08,24;UBERON:0009145,5.70e-08,24;UBERON:0000077,6.15e-08,35;UBERON:0003408,2.00e-07,24;UBERON:0000072,9.24e-07,27|phase1_expression=0.320297694209588,0.348975407639361,0,1.51232105653415,1.00179145989269,1.51091344720701,0.700837921786577,18.3355119287038,112.34940027703,113.053166213523,7.0199366972457,10.6894693053751,27.0497153291305,23.6035086531293,4.33042690360362,4.45445588257617,1.39912375625629,19.2431920868525,24.13214031461,14.004858509335,1.19060606211498,4.56738375524072,4.70159620450084,1.27993938234725,1.83527424853736,0,1.29228598847722,0,1.14014051673824,2.26827116783938,0,0,0,0,3.75507105676657,1.66234645358492,3.26670970019791,25.1118978442145,19.533383613095,31.9349483824017,42.940898626264,29.3709558532132,37.3842971833988,0.503587271902309,0.202753862439029,0.183546752161682,0,0.218025156380447,0.219686182734472,0,0,1.43752564364972,24.4962604844295,24.6623128283857,29.9123481236793,1.54355661621568,0.85960031981627,1.03134418455488,0.606949382578793,0,0.633831403506179,0,0,0,0,0.7104801149461,0,0,0.414758449233911,0.135005938331691,0,0.571301968807607,0.441737081903227,0.734944795289724,0.575072826109418,0.919218786610021,0,0.127687338085188,0.768032666281217,0.395658863190582,0.365950574409639,1.04182674111352,0,0.56276261003168,0.61119299110724,1.47314292736834,0.711858403995515,0.931997229126503,0.832988126665025,1.13357340160178,0,0,0,0,0,0,0.983110940922263,1.87473354835864,1.29893002301434,1.41335829804136,0,1.28326477414318,0,0,1.5154372870785,1.01343946190039,0.505524445014783,2.16949371466214,32.1082975722493,1.03909497345377,1.21439728736295,1.52232739156071,1.61430848079241,1.05505848386836,1.52865319276416,0.502666365318702,1.23597483867187,3.03658649531814,8.84610551949874,2.58826959915855,3.97514733228708,2.90925151881133,1.86391761218122,0.878342391034642,0.83778682725382,0.766371165625774,8.14742846640258,5.39912457894067,6.09937089950711,0.449371918214468,0,0.753926112677186,0,0.255715457330331,1.24672826735736,0.648965052271031,1.83310854930569,3.23458123586242,0.505445516867349,0.420883711772948,1.95180664444056,1.83921683546778,1.98068342785884,1.20563854268572,1.2246569847239,1.2811372028485,0.655912071918102,0,1.07783996466421,2.45837904218165,1.40760899331159,2.6303487891309,1.66828349535359,3.1342694986995,4.52720700097476,1.59227413454795,1.40442637462647,2.05878325691772,5.39910648851626,0.828503090142008,0.234526059981096,0.900310307305074,0.946978942340841,1.37734962223183,1.3884040159864,1.16266972375204,0.804820204198858,0.467061369468678,0.658239399653922,0.32833492815819,0.324275238183423,0.584799949701329,1.09775057645525,0.671032093801859,0,0,1.98251269790279,0,2.34617075588757,0.928946687441754,1.9330119198314,1.00841762311671,0.889512175379481,0.951128130562796,2.84717436926707,1.31759163779209,1.75934646160189,1.39269530428806,0.974820435595601,0.898819408654221,1.2968282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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75974 | |||
|HGNC= | |||
|MCL_coexpression_id=894 | |||
|TSSclassifier=NA | |||
|UniProt=A2AF47 | |||
|association_with_transcript=-122bp_to_ENSMUST00000033419,NM_001009947,uc009sxi.1_5end | |||
|cluster_id=chrX:33428680..33428704,+ | |||
|description=CAGE_peak_3_at_Dock11_5end | |||
|id=chrX:33428680..33428704,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.47e-08!13;CL:0000051!1.47e-08!13;CL:0000838!1.74e-08!12;CL:0000084!7.40e-08!11;CL:0000827!7.40e-08!11;CL:0000791!4.19e-07!9;CL:0000789!4.19e-07!9;CL:0002420!4.19e-07!9;CL:0002419!4.19e-07!9;CL:0000790!4.19e-07!9;CL:0000988!7.15e-07!32;CL:0002032!7.15e-07!32;CL:0000037!7.15e-07!32;CL:0000566!7.15e-07!32;CL:0000837!7.15e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.07e-09,13;CL:0000051,6.07e-09,13;CL:0000838,7.24e-09,12;CL:0000084,3.34e-08,11;CL:0000827,3.34e-08,11;CL:0000988,5.07e-08,32;CL:0002032,5.07e-08,32;CL:0000037,5.07e-08,32;CL:0000837,5.07e-08,32;CL:0000791,2.07e-07,9;CL:0000789,2.07e-07,9;CL:0002420,2.07e-07,9;CL:0002419,2.07e-07,9;CL:0000790,2.07e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!7.12e-10!29;UBERON:0002193!9.15e-09!48;UBERON:0002390!2.47e-08!45;UBERON:0003061!2.47e-08!45;UBERON:0002370!1.90e-07!23;UBERON:0000974!1.90e-07!23;UBERON:0004807!1.90e-07!23;UBERON:0005058!1.90e-07!23;UBERON:0003351!1.90e-07!23;UBERON:0009113!1.90e-07!23;UBERON:0003295!1.90e-07!23;UBERON:0009722!1.90e-07!23;UBERON:0005562!1.90e-07!23;UBERON:0007690!1.90e-07!23;UBERON:0006562!3.16e-07!24;UBERON:0001557!3.16e-07!24;UBERON:0001042!3.16e-07!24;UBERON:0008814!3.16e-07!24;UBERON:0009145!3.16e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.36e-11,29;UBERON:0005057,8.36e-11,29;UBERON:0002193,5.27e-10,48;UBERON:0002405,5.27e-10,48;UBERON:0002390,1.50e-09,45;UBERON:0003061,1.50e-09,45;UBERON:0002370,3.19e-08,23;UBERON:0000974,3.19e-08,23;UBERON:0004807,3.19e-08,23;UBERON:0005058,3.19e-08,23;UBERON:0003351,3.19e-08,23;UBERON:0009113,3.19e-08,23;UBERON:0003295,3.19e-08,23;UBERON:0009722,3.19e-08,23;UBERON:0005562,3.19e-08,23;UBERON:0007690,3.19e-08,23;UBERON:0006562,5.70e-08,24;UBERON:0001557,5.70e-08,24;UBERON:0001042,5.70e-08,24;UBERON:0008814,5.70e-08,24;UBERON:0009145,5.70e-08,24;UBERON:0000077,6.15e-08,35;UBERON:0003408,2.00e-07,24;UBERON:0000072,9.24e-07,27 | |||
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| |||
|short_description=p3@Dock11 | |||
}} |
Latest revision as of 19:53, 1 October 2015
Short description: | p3@Dock11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dock11_5end |
Coexpression cluster: | MCL_coexpression_mm9:894 |
Association with transcript: | -122bp_to_ENSMUST00000033419, NM_001009947, uc009sxi.1_5end |
EntrezGene: | Dock11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.07e-09 | 13 |
common lymphoid progenitor | 6.07e-09 | 13 |
lymphoid lineage restricted progenitor cell | 7.24e-09 | 12 |
T cell | 3.34e-08 | 11 |
pro-T cell | 3.34e-08 | 11 |
hematopoietic cell | 5.07e-08 | 32 |
hematopoietic oligopotent progenitor cell | 5.07e-08 | 32 |
hematopoietic stem cell | 5.07e-08 | 32 |
hematopoietic multipotent progenitor cell | 5.07e-08 | 32 |
mature alpha-beta T cell | 2.07e-07 | 9 |
alpha-beta T cell | 2.07e-07 | 9 |
immature T cell | 2.07e-07 | 9 |
mature T cell | 2.07e-07 | 9 |
immature alpha-beta T cell | 2.07e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 8.36e-11 | 29 |
immune organ | 8.36e-11 | 29 |
hemolymphoid system | 5.27e-10 | 48 |
immune system | 5.27e-10 | 48 |
hematopoietic system | 1.50e-09 | 45 |
blood island | 1.50e-09 | 45 |
thymus | 3.19e-08 | 23 |
neck | 3.19e-08 | 23 |
respiratory system epithelium | 3.19e-08 | 23 |
hemolymphoid system gland | 3.19e-08 | 23 |
pharyngeal epithelium | 3.19e-08 | 23 |
thymic region | 3.19e-08 | 23 |
pharyngeal gland | 3.19e-08 | 23 |
entire pharyngeal arch endoderm | 3.19e-08 | 23 |
thymus primordium | 3.19e-08 | 23 |
early pharyngeal endoderm | 3.19e-08 | 23 |
pharynx | 5.70e-08 | 24 |
upper respiratory tract | 5.70e-08 | 24 |
chordate pharynx | 5.70e-08 | 24 |
pharyngeal arch system | 5.70e-08 | 24 |
pharyngeal region of foregut | 5.70e-08 | 24 |
mixed endoderm/mesoderm-derived structure | 6.15e-08 | 35 |
gland of gut | 2.00e-07 | 24 |
segment of respiratory tract | 9.24e-07 | 27 |