FF:10263-104D2: Difference between revisions

Latest revision as of 13:57, 3 June 2020

Name:	Follicle Associated Epithelium, pool3
Species:	Mouse (Mus musculus)
Library ID:	CNhs13200
Sample type:	tissues
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	Balb/c
tissue	Peyer's patch
dev stage	NA
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Shinji Fukuda (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	FAE_c
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005062

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13200		CAGE		DRX008922		DRR009796

Accession ID Mm9

Library id		BAM		CTSS
CNhs13200		DRZ001221		DRZ002604

Accession ID Mm10

Library id		BAM		CTSS
CNhs13200		DRZ012571		DRZ013954

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13200

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	-0.116
1003	-0.175
1004	0
1005	1.022
1006	-0.346
1007	-0.108
1008	1.953
1009	-0.19
101	-0.0984
1010	0
1011	-0.337
1012	0
1013	0.309
1014	-0.0874
1015	-0.236
1016	-0.563
1017	0
1018	0.486
1019	0
102	0
1020	0
1021	0.332
1022	-0.0343
1023	0
1024	-0.185
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.0872
103	-0.0887
1030	0
1031	-0.911
1032	0.916
1033	0.0232
1034	0
1035	0
1036	0.0746
1037	0
1038	-0.153
1039	0.0676
104	0
1040	-0.756
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13200

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00293
MA0003.1	MA0003.1	0.246
MA0004.1	MA0004.1	0.917
MA0006.1	MA0006.1	0.106
MA0007.1	MA0007.1	0.504
MA0009.1	MA0009.1	0.591
MA0014.1	MA0014.1	0.185
MA0017.1	MA0017.1	4.5492e-18
MA0018.2	MA0018.2	0.168
MA0019.1	MA0019.1	0.113
MA0024.1	MA0024.1	0.0666
MA0025.1	MA0025.1	0.724
MA0027.1	MA0027.1	0.886
MA0028.1	MA0028.1	0.0516
MA0029.1	MA0029.1	0.664
MA0030.1	MA0030.1	0.495
MA0031.1	MA0031.1	0.877
MA0035.2	MA0035.2	0.00153
MA0038.1	MA0038.1	0.379
MA0039.2	MA0039.2	5.39073e-4
MA0040.1	MA0040.1	0.142
MA0041.1	MA0041.1	0.431
MA0042.1	MA0042.1	0.666
MA0043.1	MA0043.1	0.0651
MA0046.1	MA0046.1	1.20768e-34
MA0047.2	MA0047.2	0.068
MA0048.1	MA0048.1	0.595
MA0050.1	MA0050.1	1.11319e-4
MA0051.1	MA0051.1	6.48562e-4
MA0052.1	MA0052.1	1.98769e-4
MA0055.1	MA0055.1	0.691
MA0057.1	MA0057.1	0.0985
MA0058.1	MA0058.1	0.985
MA0059.1	MA0059.1	0.538
MA0060.1	MA0060.1	0.00903
MA0061.1	MA0061.1	0.00468
MA0062.2	MA0062.2	7.63928e-5
MA0065.2	MA0065.2	2.65542e-10
MA0066.1	MA0066.1	0.121
MA0067.1	MA0067.1	0.446
MA0068.1	MA0068.1	0.365
MA0069.1	MA0069.1	0.804
MA0070.1	MA0070.1	0.0625
MA0071.1	MA0071.1	0.212
MA0072.1	MA0072.1	0.714
MA0073.1	MA0073.1	0.892
MA0074.1	MA0074.1	0.325
MA0076.1	MA0076.1	0.126
MA0077.1	MA0077.1	0.874
MA0078.1	MA0078.1	0.49
MA0079.2	MA0079.2	0.457
MA0080.2	MA0080.2	7.03977e-10
MA0081.1	MA0081.1	0.257
MA0083.1	MA0083.1	0.0116
MA0084.1	MA0084.1	0.592
MA0087.1	MA0087.1	0.837
MA0088.1	MA0088.1	0.184
MA0090.1	MA0090.1	0.695
MA0091.1	MA0091.1	0.521
MA0092.1	MA0092.1	0.417
MA0093.1	MA0093.1	0.976
MA0099.2	MA0099.2	1.60766e-6
MA0100.1	MA0100.1	0.747
MA0101.1	MA0101.1	0.00153
MA0102.2	MA0102.2	0.37
MA0103.1	MA0103.1	2.11984e-6
MA0104.2	MA0104.2	0.502
MA0105.1	MA0105.1	0.00551
MA0106.1	MA0106.1	0.152
MA0107.1	MA0107.1	0.00274
MA0108.2	MA0108.2	0.815
MA0111.1	MA0111.1	0.916
MA0112.2	MA0112.2	4.2466e-4
MA0113.1	MA0113.1	0.447
MA0114.1	MA0114.1	1.02686e-18
MA0115.1	MA0115.1	1.99914e-11
MA0116.1	MA0116.1	0.0782
MA0117.1	MA0117.1	0.91
MA0119.1	MA0119.1	0.185
MA0122.1	MA0122.1	0.704
MA0124.1	MA0124.1	0.22
MA0125.1	MA0125.1	0.215
MA0131.1	MA0131.1	0.906
MA0135.1	MA0135.1	0.353
MA0136.1	MA0136.1	6.63414e-16
MA0137.2	MA0137.2	0.0811
MA0138.2	MA0138.2	0.725
MA0139.1	MA0139.1	0.0493
MA0140.1	MA0140.1	0.122
MA0141.1	MA0141.1	1.12699e-4
MA0142.1	MA0142.1	0.123
MA0143.1	MA0143.1	0.137
MA0144.1	MA0144.1	0.0269
MA0145.1	MA0145.1	0.0281
MA0146.1	MA0146.1	0.228
MA0147.1	MA0147.1	0.752
MA0148.1	MA0148.1	0.0257
MA0149.1	MA0149.1	0.00814
MA0150.1	MA0150.1	0.0301
MA0152.1	MA0152.1	0.0866
MA0153.1	MA0153.1	9.23756e-31
MA0154.1	MA0154.1	0.0126
MA0155.1	MA0155.1	0.758
MA0156.1	MA0156.1	4.57649e-8
MA0157.1	MA0157.1	0.687
MA0159.1	MA0159.1	2.39489e-4
MA0160.1	MA0160.1	0.00531
MA0162.1	MA0162.1	0.276
MA0163.1	MA0163.1	0.012
MA0164.1	MA0164.1	0.505
MA0258.1	MA0258.1	0.0256
MA0259.1	MA0259.1	0.624

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13200

Novel motif	Logo	P-value
1	1	0.109
10	10	0.123
100	100	0.79
101	101	0.918
102	102	0.959
103	103	0.118
104	104	0.765
105	105	0.449
106	106	0.0427
107	107	0.178
108	108	0.838
109	109	0.0223
11	11	0.102
110	110	0.25
111	111	0.0548
112	112	0.014
113	113	0.542
114	114	0.0738
115	115	0.546
116	116	0.202
117	117	0.0297
118	118	0.297
119	119	0.0778
12	12	0.649
120	120	0.555
121	121	0.385
122	122	0.987
123	123	0.104
124	124	0.542
125	125	0.681
126	126	0.0829
127	127	0.253
128	128	0.094
129	129	0.0919
13	13	0.00125
130	130	0.865
131	131	0.955
132	132	0.593
133	133	0.861
134	134	0.999
135	135	0.105
136	136	0.0725
137	137	0.963
138	138	0.438
139	139	0.104
14	14	0.663
140	140	0.198
141	141	0.139
142	142	0.597
143	143	0.764
144	144	0.245
145	145	0.124
146	146	0.393
147	147	0.743
148	148	0.451
149	149	0.932
15	15	0.141
150	150	0.448
151	151	0.544
152	152	0.0639
153	153	0.594
154	154	0.899
155	155	0.289
156	156	0.0393
157	157	0.47
158	158	0.645
159	159	0.542
160	160	0.629
161	161	0.388
162	162	0.476
163	163	0.267
164	164	0.154
165	165	0.0651
166	166	0.611
167	167	0.545
168	168	0.974
169	169	0.0129
17	17	0.0497
18	18	0.705
19	19	0.237
2	2	0.817
20	20	0.616
21	21	0.45
22	22	0.345
23	23	0.639
24	24	0.743
25	25	0.435
26	26	0.00597
27	27	0.606
28	28	0.363
29	29	0.0576
3	3	0.0646
30	30	0.467
31	31	0.69
32	32	0.0934
33	33	0.209
34	34	0.909
35	35	0.482
36	36	0.201
37	37	0.0386
38	38	0.385
39	39	0.381
4	4	0.407
40	40	0.172
41	41	0.451
42	42	0.392
43	43	0.181
44	44	0.0501
45	45	0.49
46	46	0.178
47	47	0.216
48	48	0.141
49	49	0.233
5	5	0.421
50	50	0.44
51	51	0.656
52	52	0.233
53	53	0.52
54	54	0.557
55	55	0.968
56	56	0.384
57	57	0.89
58	58	0.259
59	59	0.136
6	6	0.511
60	60	0.0495
61	61	0.185
62	62	0.14
63	63	0.121
64	64	0.638
65	65	0.228
66	66	0.934
67	67	0.506
68	68	0.0133
69	69	0.849
7	7	0.085
70	70	0.00417
71	71	0.0654
72	72	0.406
73	73	0.0381
74	74	0.508
75	75	0.0132
76	76	0.534
77	77	0.13
78	78	0.0301
79	79	0.659
8	8	0.0787
80	80	0.631
81	81	0.695
82	82	0.0898
83	83	0.0514
84	84	0.434
85	85	0.0694
86	86	0.15
87	87	0.014
88	88	0.536
89	89	0.185
9	9	0.878
90	90	0.0303
91	91	0.462
92	92	0.372
93	93	0.283
94	94	0.471
95	95	0.0241
96	96	0.72
97	97	0.899
98	98	0.359
99	99	0.305

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13200

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011473 mouse Follicle Associated Epithelium sample
UBERON:0000483 epithelium
UBERON:0003199 egg chamber

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000483 (epithelium)
0001962 (gut-associated lymphoid tissue)
0000479 (tissue)
0003199 (egg chamber)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0001961 (mucosa-associated lymphoid tissue)
0001744 (lymphoid tissue)
0000464 (anatomical space)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002465 (lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011473 (mouse Follicle Associated Epithelium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008785
+|DRA_sample_Accession=CAGE@SAMD00005062
+|accession_numbers=CAGE;DRX008922;DRR009796;DRZ001221;DRZ002604;DRZ012571;DRZ013954
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000483,UBERON:0001962,UBERON:0000479,UBERON:0003199,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0001961,UBERON:0001744,UBERON:0000464,UBERON:0010317,UBERON:0001555,UBERON:0002465,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.65!510.21!Creb3l3;;chr7:51787434..51787448,-!p1@Spib!2.57!521.45!Spib;;chr3:3634145..3634161,+!p1@Hnf4g!2.36!228.49!Hnf4g;;chr5:148118639..148118715,-!p1@Cdx2!1.94!86.95!Cdx2;;chr2:163332558..163332596,+!p2@Hnf4a!1.90!78.00!Hnf4a;;chr2:163372884..163372904,+!p1@Hnf4a!1.88!75.71!Hnf4a;;chr6:86619104..86619119,-!p1@Mxd1!1.84!529.48!Mxd1;;chr8:77396591..77396639,+!p1@Isx!1.74!53.68!Isx;;chr1:137155026..137155042,-!p1@Elf3!1.73!292.73!Elf3;;chr16:38294860..38294924,-!p1@Nr1i2!1.63!41.52!Nr1i2;;chr9:51021788..51021802,+!p1@Pou2af1!1.60!45.42!Pou2af1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.56!44.96!Zbtb11;;chr3:3508024..3508069,+!p2@Hnf4g!1.55!34.64!Hnf4g;;chr1:173144100..173144138,+!p2@Nr1i3!1.54!33.49!Nr1i3;;chr10:88969376..88969395,-!p1@Nr1h4!1.51!31.20!Nr1h4;;chr18:61195865..61195880,-!p1@Cdx1!1.50!30.97!Cdx1;;chr14:63864056..63864102,-!p1@Gata4!1.43!44.51!Gata4;;chr6:64679112..64679126,+!p1@Atoh1!1.43!25.92!Atoh1;;chr13:30841099..30841116,+!p1@Irf4!1.42!39.23!Irf4;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.46!Spdef;;chr10:80555398..80555409,-!p2@Creb3l3!1.42!25.24!Creb3l3;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.40!24.32!Sp140;;chr4:124805061..124805087,-!p1@Zc3h12a!1.35!64.92!Zc3h12a;;chr18:61195843..61195864,-!p2@Cdx1!1.34!20.65!Cdx1;;chr2:180069370..180069409,-!p1@Gata5!1.33!24.09!Gata5;;chr2:103123925..103123959,-!p3@Ehf!1.31!19.27!Ehf;;chr7:19608891..19608895,-!p1@Foxa3!1.29!24.09!Foxa3;;chr5:135582751..135582788,+!p1@Mlxipl!1.28!70.66!Mlxipl;;chr5:148118840..148118857,-!p2@Cdx2!1.27!17.66!Cdx2;;chr14:99697871..99697934,+!p1@Klf5!1.26!333.10!Klf5;;chr5:120121169..120121171,+!p4@Tbx3!1.21!27.07!Tbx3;;chr1:194979315..194979359,+!p1@Irf6!1.20!88.78!Irf6;;chr8:77397095..77397127,+!p2@Isx!1.20!14.68!Isx;;chr15:97738692..97738747,-!p1@Vdr!1.19!78.46!Vdr;;chr2:133377954..133377973,+!p1@Bmp2!1.19!45.88!Bmp2;;chr4:122673187..122673201,+!p2@Mycl1!1.19!25.92!Mycl1;;chr19:46380235..46380277,+!p3@Nfkb2!1.17!29.59!Nfkb2;;chr5:148118792..148118806,-!p3@Cdx2!1.16!13.54!Cdx2;;chr2:103143336..103143367,-!p1@Ehf!1.14!20.65!Ehf;;chr8:77396650..77396662,+!p4@Isx!1.14!12.85!Isx;;chr19:5560600..5560617,-!p1@Ovol1!1.13!15.37!Ovol1;;chr8:77397492..77397514,+!p3@Isx!1.12!12.16!Isx;;chr18:64499706..64499721,+!p2@Onecut2!1.10!16.29!Onecut2;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!1.10!11.70!Sp140;;chr10:80555285..80555291,-!p4@Creb3l3!1.10!11.47!Creb3l3;;chr18:64499674..64499696,+!p1@Onecut2!1.07!18.58!Onecut2;;chr10:80555299..80555306,-!p3@Creb3l3!1.06!10.55!Creb3l3;;chr5:115421065..115421088,-!p1@Hnf1a!1.06!10.55!Hnf1a;;chr14:76887526..76887555,+!p10@Tsc22d1!1.05!10.09!Tsc22d1;;chr3:3508005..3508021,+!p3@Hnf4g!1.03!9.64!Hnf4g;;chr7:20213752..20213778,-!p2@Relb!1.02!9.41!Relb;;chr17:25707623..25707639,-!p1@Sox8!1.01!39.92!Sox8;;chr5:144951153..144951203,+!p1@Bhlha15!1.01!13.54!Bhlha15;;chr1:173144144..173144176,+!p1@Nr1i3!1.01!9.18!Nr1i3;;chr8:77397190..77397202,+!p5@Isx!1.00!8.95!Isx;;chr7:148452314..148452329,-!p1@Irf7!0.99!63.09!Irf7;;chr11:53583544..53583559,+!p1@Irf1!0.97!143.61!Irf1;;chr7:20408047..20408125,-!p1@Bcl3!0.95!93.14!Bcl3;;chr12:56593574..56593592,-!p1@Nfkbia!0.94!411.79!Nfkbia;;chr7:20214704..20214800,-!p1@Relb!0.94!25.92!Relb;;chr2:28477452..28477483,-!p1@Gfi1b!0.94!9.64!Gfi1b;;chr8:87643578..87643593,-!p1@Zfp791!0.93!15.83!Zfp791;;chr10:20880629..20880683,-!p1@Myb!0.92!21.79!Myb;;chr15:35225845..35225867,+!p1@Osr2!0.91!18.35!Osr2;;chr2:163372869..163372882,+!p3@Hnf4a!0.91!7.11!Hnf4a;;chr1:194979361..194979373,+!p2@Irf6!0.90!9.64!Irf6;;chr12:58646974..58647003,-!p1@Foxa1!0.90!9.41!Foxa1;;chr19:6996243..6996293,-!p1@Esrra!0.88!75.71!Esrra;;chr2:103143315..103143328,-!p2@Ehf!0.87!6.42!Ehf;;chr5:148118614..148118625,-!p4@Cdx2!0.87!6.42!Cdx2;;chr3:135354384..135354443,-!p1@Nfkb1!0.86!40.15!Nfkb1;;chr19:46379199..46379301,+!p1@Nfkb2!0.86!37.85!Nfkb2;;chr5:148118809..148118832,-!p5@Cdx2!0.86!6.19!Cdx2;;chr8:123260252..123260264,+!p1@Irf8!0.85!45.19!Irf8;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.85!18.35!Tfcp2l1;;chr12:86814833..86814846,+!p1@Fos!0.83!144.99!Fos;;chr1:38721792..38721845,-!p1@Aff3!0.83!7.34!Aff3;;chr1:87497443..87497454,+!p3@Gm2427,p3@Sp140!0.83!5.74!Sp140;;chr4:134676555..134676575,+!p2@Runx3!0.83!5.74!Runx3;;chr4:148178559..148178603,+!p1@Casz1!0.81!16.75!Casz1;;chr11:98636400..98636418,-!p4@Nr1d1!0.81!7.34!Nr1d1;;chr7:52960555..52960662,+!p1@Dbp!0.80!49.32!Dbp;;chr1:39250584..39250643,+!p1@Npas2!0.80!29.13!Npas2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.79!18.58!Zbtb7b;;chr8:125778192..125778217,+!p2@Zfp276!0.79!15.60!Zfp276;;chr2:173044380..173044432,-!p1@Zbp1!0.78!12.85!Zbp1;;chr17:28409136..28409150,+!p3@Ppard!0.78!5.05!Ppard;;chr17:34784073..34784118,+!p2@Atf6b!0.77!21.56!Atf6b;;chr19:55816546..55816556,+!p3@Tcf7l2!0.77!20.19!Tcf7l2;;chr3:90046995..90047031,-!p2@Creb3l4!0.77!6.19!Creb3l4;;chr2:79296783..79296801,-!p1@Neurod1!0.76!4.82!Neurod1;;chr1:194979383..194979393,+!p3@Irf6!0.76!4.82!Irf6;;chr14:63890545..63890560,-!p5@Gata4!0.76!4.82!Gata4;;chr17:45692642..45692663,+!p1@Nfkbie!0.75!16.06!Nfkbie;;chr14:63890519..63890539,-!p3@Gata4!0.75!4.59!Gata4;;chr4:44723559..44723593,-!p1@Pax5!0.75!4.59!Pax5;;chr11:98407264..98407295,-!p1@Ikzf3!0.75!4.59!Ikzf3;;chr11:98636531..98636559,-!p1@Nr1d1!0.74!28.22!Nr1d1;;chr10:127095407..127095440,+!p3@Stat6!0.74!5.74!Stat6;;chr7:31206743..31206761,+!p1@Nfkbid!0.73!6.19!Nfkbid;;chr4:133109285..133109308,+!p1@Nr0b2!0.73!4.36!Nr0b2;;chr7:150155143..150155156,-!p1@Ascl2!0.73!4.36!Ascl2;;chr8:87502608..87502623,-!p1@Junb!0.72!78.69!Junb;;chr8:72676653..72676668,+!p4@2310045N01Rik,p4@Mef2b!0.71!4.13!Mef2b;;chr11:70500401..70500460,-!p3@Camta2!0.71!4.13!Camta2;;chr5:148081686..148081715,+!p1@Pdx1!0.71!4.13!Pdx1;;chr1:138857048..138857071,-!p2@Nr5a2!0.71!4.13!Nr5a2;;chr3:94176733..94176794,+!p1@Rorc!0.70!34.87!Rorc;;chr17:45692676..45692695,+!p2@Nfkbie!0.70!8.72!Nfkbie;;chr6:39068163..39068176,-!p2@Parp12!0.70!8.03!Parp12;;chr11:96690797..96690813,-!p1@Nfe2l1!0.69!84.88!Nfe2l1;;chr12:36219283..36219298,-!p2@Ahr!0.69!3.90!Ahr;;chr4:43575544..43575565,+!p2@Creb3!0.67!24.55!Creb3;;chr4:135700687..135700719,+!p2@Id3!0.67!5.96!Id3;;chr9:31720843..31720888,-!p1@Barx2!0.67!4.13!Barx2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.67!3.67!Ppard;;chr14:79915425..79915501,+!p1@Elf1!0.65!36.25!Elf1;;chr4:124805092..124805135,-!p2@Zc3h12a!0.65!16.98!Zc3h12a;;chr18:11052606..11052633,+!p4@Gata6!0.65!9.86!Gata6;;chr7:20162663..20162678,+!p1@Zfp296!0.65!4.82!Zfp296;;chr8:77397026..77397036,+!p6@Isx!0.65!3.44!Isx;;chr14:63890491..63890516,-!p2@Gata4!0.65!3.44!Gata4;;chr10:61595830..61595846,+!p1@Neurog3!0.65!3.44!Neurog3;;chr11:100948597..100948637,+!p1@Mlx!0.64!94.75!Mlx;;chr11:11586218..11586285,+!p1@Ikzf1!0.64!12.16!Ikzf1;;chr2:91035254..91035271,-!p3@Nr1h3!0.64!4.36!Nr1h3;;chr2:173044357..173044377,-!p2@Zbp1!0.63!5.05!Zbp1;;chr19:53384910..53384937,+!p3@Mxi1!0.62!10.09!Mxi1;;chr5:76733981..76734018,-!p3@Clock!0.62!7.57!Clock;;chr2:91035197..91035237,-!p1@Nr1h3!0.62!7.34!Nr1h3;;chr11:98636373..98636387,-!p5@Nr1d1!0.61!3.67!Nr1d1;;chr16:55822241..55822258,-!p1@Nfkbiz!0.60!111.72!Nfkbiz;;chr8:87225329..87225396,+!p1@Lyl1!0.60!13.08!Lyl1;;chr19:5560570..5560582,-!p2@Ovol1!0.60!2.98!Ovol1;;chr15:85565338..85565355,+!p7@Ppara!0.60!2.98!Ppara;;chr3:128918394..128918413,+!p5@Pitx2!0.60!2.98!Pitx2;;chr11:5420655..5420659,+!p3@Xbp1!0.60!2.98!Xbp1;;chr18:11052642..11052659,+!p1@Gata6!0.59!17.44!Gata6;;chr15:79177964..79177986,+!p1@Maff!0.59!11.70!Maff;;chr2:90936901..90936945,+!p1@Sfpi1!0.58!17.89!Sfpi1;;chrX:7339938..7339963,+!p1@Tfe3!0.58!17.21!Tfe3;;chr10:44178375..44178390,-!p2@Prdm1!0.58!4.13!Prdm1;;chr12:36219645..36219730,-!p1@Ahr!0.57!32.58!Ahr;;chr18:11052485..11052508,+!p2@Gata6!0.57!8.95!Gata6;;chr8:73905344..73905381,-!p2@Nr2f6!0.57!7.57!Nr2f6;;chr4:148178529..148178548,+!p3@Casz1!0.57!7.34!Casz1;;chr5:140267510..140267555,+!p2@Mafk!0.57!7.34!Mafk;;chr13:44825008..44825066,+!p5@Jarid2!0.57!5.96!Jarid2;;chr15:85566184..85566238,+!p1@Ppara!0.57!4.36!Ppara;;chr11:98407370..98407395,-!p3@Ikzf3!0.57!2.75!Ikzf3;;chr11:98407234..98407259,-!p2@Ikzf3!0.57!2.75!Ikzf3;;chr1:189433521..189433548,+!p5@Esrrg!0.57!2.75!Esrrg;;chr8:118231678..118231692,-!p2@Maf!0.56!29.59!Maf;;chr6:145813905..145813932,-!p2@Bhlhe41!0.56!5.74!Bhlhe41;;chr19:6996294..6996324,-!p2@Esrra!0.55!20.88!Esrra;;chr6:29476690..29476724,+!p1@Irf5!0.55!14.45!Irf5;;chr7:134519511..134519534,-!p2@Zfp747!0.55!5.28!Zfp747;;chr8:47825203..47825225,+!p3@Irf2!0.55!3.67!Irf2;;chr2:180069640..180069660,-!p4@Gata5!0.55!2.52!Gata5;;chr15:35225873..35225889,+!p2@Osr2!0.55!2.52!Osr2;;chr5:148081722..148081744,+!p2@Pdx1!0.55!2.52!Pdx1;;chr11:96976641..96976646,-!p1@Tbx21!0.55!2.52!Tbx21;;chr4:44723520..44723544,-!p2@Pax5!0.55!2.52!Pax5;;chr5:120121020..120121049,+!p1@Tbx3!0.54!18.81!Tbx3;;chr6:108610766..108610781,+!p2@Bhlhe40!0.54!5.05!Bhlhe40;;chr1:133904946..133904974,+!p7@Elk4!0.54!4.13!Elk4;;chr7:29551488..29551529,-!p1@Nfkbib!0.53!98.19!Nfkbib;;chr13:5860776..5860796,+!p1@Klf6!0.53!74.56!Klf6;;chr5:77524250..77524300,-!p1@Hopx!0.53!62.17!Hopx;;chr7:29551464..29551487,-!p2@Nfkbib!0.53!11.24!Nfkbib;;chr11:96690779..96690790,-!p3@Nfe2l1!0.53!6.88!Nfe2l1;;chr6:37391910..37391928,-!p3@Creb3l2!0.53!2.75!Creb3l2;;chr7:134519473..134519502,-!p3@Zfp747!0.52!3.44!Zfp747;;chr12:87027663..87027678,+!p2@Batf!0.52!2.29!Batf;;chr19:6164433..6164446,+!p2@Batf2!0.52!2.29!Batf2;;chr11:83664365..83664383,+!p1@Hnf1b!0.52!2.29!Hnf1b;;chr4:148178459..148178482,+!p4@Casz1!0.52!2.29!Casz1;;chr2:75542527..75542590,-!p1@Nfe2l2!0.51!262.67!Nfe2l2;;chr10:80813050..80813114,-!p2@Hmg20b!0.51!31.66!Hmg20b;;chr10:107769168..107769215,+!p1@Pawr!0.51!29.59!Pawr;;chr12:78063146..78063159,-!p2@Max!0.51!7.11!Max;;chr19:46380172..46380231,+!p2@Nfkb2!0.50!19.27!Nfkb2;;chr15:81977766..81977789,+!p3@Srebf2!0.50!17.44!Srebf2;;chr11:16908650..16908690,-!p1@Plek!0.50!16.98!Plek;;chr6:39068181..39068206,-!p3@Parp12!0.50!5.28!Parp12;;chr4:87452180..87452196,-!p3@Mllt3!0.50!5.05!M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@@ Line 42: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011473;;UBERON:0000483;;UBERON:0003199
 |is_obsolete=
-|library_ids=CNhs13200
+|library_id=CNhs13200
+|library_id_phase_based=2:CNhs13200
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;10263
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;10263
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool3.CNhs13200.10263-104D2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool3.CNhs13200.10263-104D2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool3.CNhs13200.10263-104D2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool3.CNhs13200.10263-104D2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool3.CNhs13200.10263-104D2.mm9.nobarcode.rdna.fa.gz
 |name=Follicle Associated Epithelium, pool3
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13200,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.125397220828674,0,0,0.0896964873768703,0,0,-0.201756864393453,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0820006403388415,0,-0.0278920702048912,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.182493071875485,0,0.227431058621176,0,0.0896964873768703,-0.00567974065847477,-0.164474481807391,-0.147183777116722,-0.0555117552012521,-0.984211366477826,-0.180172150633481,0,0,0,0,0,0,0,0,0,0,0,0.0896964873768703,-0.0660055475634404,0,0,0,0,0.19013673059627,0,0,0,0,0,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.0365927089968535,0,0,-0.105478875144054,-0.0847065258695162,0,0,-0.110990174089042,-0.0498146771355614,-0.143319807329661,-0.0788315948399074,0,0,0,0,0,0.452595073410909,0.111314759440914,0.269140241514122,0.726252539204271,0,0,0,0,0
@@ Line 85: / Line 97: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10263-104D2;search_select_hide=table117:10263-104D2
-|DRA_sample_Accession=CAGE@DRS008785
-|accession_numbers=DRX008922;DRR009796;DRZ001221;DRZ002604;CAGE
-|library_id=CNhs13200
 }}

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From FANTOM5_SSTAR

Latest revision as of 13:57, 3 June 2020

CNhs13200

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0