FFCP PHASE1:Hg19::chr3:189586378..189586390,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport= | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:189586378..189586390,+ | |||
|coexpression_cluster_id=C2735 | |coexpression_cluster_id=C2735 | ||
|description=CAGE_peak_at_chr3:189586378..189586390,+ | |description=CAGE_peak_at_chr3:189586378..189586390,+ | ||
Latest revision as of 19:23, 29 July 2015
| Short description: | p@chr3:189586378..189586390, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr3:189586378..189586390, + |
| Coexpression cluster: | C2735_oral_Sebocyte_Keratinocyte_Small_cervical_Prostate_keratoacanthoma |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p@chr3:189586378..189586390+ |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 1.92e-38 | 42 |
| endodermal cell | 1.71e-33 | 58 |
| epithelial cell of alimentary canal | 1.74e-28 | 20 |
| epithelial cell | 6.82e-23 | 253 |
| acinar cell | 1.63e-16 | 5 |
| respiratory epithelial cell | 9.48e-15 | 13 |
| general ecto-epithelial cell | 3.36e-14 | 14 |
| protein secreting cell | 1.05e-13 | 6 |
| transitional epithelial cell | 1.25e-13 | 4 |
| urothelial cell | 1.25e-13 | 4 |
Showing 1 to 10 of 25 entries
| Ontology term | p-value | n |
|---|---|---|
| oral opening | 2.78e-18 | 22 |
| mouth | 8.12e-16 | 29 |
| stomodeum | 8.12e-16 | 29 |
| mouth mucosa | 7.14e-15 | 13 |
| orifice | 2.62e-14 | 36 |
| mucosa of oral region | 4.24e-14 | 4 |
| respiratory system mucosa | 4.24e-14 | 4 |
| surface structure | 6.67e-13 | 99 |
| head | 1.94e-12 | 56 |
| anterior region of body | 2.71e-12 | 62 |
Showing 1 to 10 of 36 entries
| Ontology term | p-value | n |
|---|---|---|
| squamous cell carcinoma | 2.39e-26 | 14 |
| pancreatic cancer | 2.48e-07 | 4 |
| pancreas adenocarcinoma | 4.94e-07 | 2 |
| pancreatic carcinoma | 4.94e-07 | 2 |
| pancreatic ductal adenocarcinoma | 4.94e-07 | 2 |
Showing 1 to 5 of 5 entries
