UBERON:0001690: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|located_in= | |located_in= | ||
|name=ear | |name=ear | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000033;;UBERON:0002105 | |part_of=UBERON:0000033;;UBERON:0002105 | ||
Latest revision as of 17:19, 12 September 2014
| Name: | ear | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory apparatus" RELATED [] "auris" RELATED [BTO:0000368] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system) |
Children
| part of: | UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:42158627..42158630, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:63079735..63079745, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ff | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_1d13cb136fd2abf98a4e0d45469142ff | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_1d13cb136fd2abf98a4e0d45469142ff | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Dytn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_1d13cb136fd2abf98a4e0d45469142ff | p2@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_1d13cb136fd2abf98a4e0d45469142ff | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_1d13cb136fd2abf98a4e0d45469142ff | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_1d13cb136fd2abf98a4e0d45469142ff | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_1d13cb136fd2abf98a4e0d45469142ff | p5@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_1d13cb136fd2abf98a4e0d45469142ff | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_1d13cb136fd2abf98a4e0d45469142ff | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_1d13cb136fd2abf98a4e0d45469142ff | p4@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_1d13cb136fd2abf98a4e0d45469142ff | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_1d13cb136fd2abf98a4e0d45469142ff | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_1d13cb136fd2abf98a4e0d45469142ff | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_1d13cb136fd2abf98a4e0d45469142ff | p21@Espn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ff | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_1d13cb136fd2abf98a4e0d45469142ff | p@chr3:58626291..58626298, - |
