UBERON:0010313: Difference between revisions
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|name=neural crest-derived structure | |name=neural crest-derived structure | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:08, 12 September 2014
| Name: | neural crest-derived structure |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An anatomical structure that develops from the neural crest." [UBERON:cjm] |
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0002342(neural crest) |
Children
| is a: | UBERON:0000395 (cochlear ganglion),UBERON:0000946 (cardial valve),UBERON:0000964 (cornea),UBERON:0001236 (adrenal medulla),UBERON:0001601 (extra-ocular muscle),UBERON:0001694 (petrous part of temporal bone),UBERON:0001769 (iris),UBERON:0001775 (ciliary body),UBERON:0001777 (substantia propria of cornea),UBERON:0001778 (ciliary epithelium),UBERON:0001808 (parasympathetic ganglion),UBERON:0001839 (bony labyrinth),UBERON:0001844 (cochlea),UBERON:0002005 (enteric nervous system),UBERON:0002203 (vasculature of eye),UBERON:0002397 (maxilla),UBERON:0002506 (iris epithelium),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0003462 (facial bone),UBERON:0003956 (aqueous drainage system),UBERON:0005427 (corneal primordium),UBERON:0005620 (primary palate),UBERON:0005969 (reticulum trabeculare),UBERON:0006232 (facio-acoustic VII-VIII preganglion complex),UBERON:0011156 (facial skeleton),UBERON:0011892 (anterior uvea),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex),UBERON:0014387 (mesenchyme derived from neural crest) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10205-103F7 (heart - mitral valve, adult)
- 10206-103F8 (heart - pulmonic valve, adult)
- 10207-103F9 (heart - tricuspid valve, adult)
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10300-104H3
- 10328-105B4
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
- 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
... further results Mouse (Mus musculus)
- 10205-103F7 (heart - mitral valve, adult)
- 10206-103F8 (heart - pulmonic valve, adult)
- 10207-103F9 (heart - tricuspid valve, adult)
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10300-104H3
- 10328-105B4
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
- 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010313 (neural crest-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:52158594..52158603,-#_1ae57615d2f79c24a2398376efcc4092 | p@chr6:52158594..52158603, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:52158594..52158603,-#_1ae57615d2f79c24a2398376efcc4092 | p@chr6:52158594..52158603, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr4:152858080..152858084,-#_b65ea3636c28f514b514bf2a2bc93338 | p@chr4:152858080..152858084, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr4:152858080..152858084,-#_b65ea3636c28f514b514bf2a2bc93338 | p@chr4:152858080..152858084, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:143239748..143239753,+#_c75ae6419067e881bdd713c5d282946e | p@chr7:143239748..143239753, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:143239748..143239753,+#_c75ae6419067e881bdd713c5d282946e | p@chr7:143239748..143239753, + |
| 4.85e-45 | FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_061c452cc479413a804938946b997572 | p@chr7:25815812..25815822, - |
| 4.85e-45 | FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_061c452cc479413a804938946b997572 | p@chr7:25815812..25815822, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:88008549..88008559,-#_59ea814c5189e6f3ad814b259ded983b | p4@Htr2b |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:88008549..88008559,-#_59ea814c5189e6f3ad814b259ded983b | p4@Htr2b |
| 3.27e-44 | FFCP PHASE2:Mm9::chr2:74583733..74583738,+#_756453d241ec09e197a9676db2a090fb | p13@Hoxd3 |
| 3.27e-44 | FFCP PHASE1:Mm9::chr2:74583733..74583738,+#_756453d241ec09e197a9676db2a090fb | p13@Hoxd3 |
| 4.58e-44 | FFCP PHASE1:Mm9::chr13:96388617..96388624,-#_83dfe234239606595143f08316d34d9f | p4@F2r |
| 4.58e-44 | FFCP PHASE2:Mm9::chr13:96388617..96388624,-#_83dfe234239606595143f08316d34d9f | p4@F2r |
| 8.97e-44 | FFCP PHASE1:Mm9::chr5:88358803..88358820,+#_ac1294ba117ee692e7bce310b9bac98d | p@chr5:88358803..88358820, + |
| 8.97e-44 | FFCP PHASE2:Mm9::chr5:88358803..88358820,+#_ac1294ba117ee692e7bce310b9bac98d | p@chr5:88358803..88358820, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_661d2d0afa71165b80590490d29bc57d | p@chr12:3373147..3373149, - |
| 2.0e-40 | FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_661d2d0afa71165b80590490d29bc57d | p@chr12:3373147..3373149, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr11:4397590..4397595,-#_af6c56a7da060a27a460b921e7621a44 | p@chr11:4397590..4397595, - |
| 4.15e-39 | FFCP PHASE2:Mm9::chr11:4397590..4397595,-#_af6c56a7da060a27a460b921e7621a44 | p@chr11:4397590..4397595, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr9:35352286..35352290,-#_768638943922e130aefdb0ca6add1973 | p@chr9:35352286..35352290, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr9:35352286..35352290,-#_768638943922e130aefdb0ca6add1973 | p@chr9:35352286..35352290, - |
| 1.56e-38 | FFCP PHASE2:Mm9::chr15:102928215..102928218,-#_ba33234807fd60cf535022ad3f193e01 | p@chr15:102928215..102928218, - |
| 1.56e-38 | FFCP PHASE1:Mm9::chr15:102928215..102928218,-#_ba33234807fd60cf535022ad3f193e01 | p@chr15:102928215..102928218, - |
| 3.73e-38 | FFCP PHASE2:Mm9::chr11:96164868..96164875,+#_a51be825cce1871794af8fb0d0c0020e | p5@Hoxb5 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr11:96164868..96164875,+#_a51be825cce1871794af8fb0d0c0020e | p5@Hoxb5 |
| 4.98e-38 | FFCP PHASE1:Mm9::chr11:96176093..96176104,+#_d4e134e74edb9c011210fe31e2bc4d54 | p@chr11:96176093..96176104, + |
| 4.98e-38 | FFCP PHASE2:Mm9::chr11:96176093..96176104,+#_d4e134e74edb9c011210fe31e2bc4d54 | p@chr11:96176093..96176104, + |
| 3.44e-36 | FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_510e96342aadfe9ae79229eaa60cd7b2 | p@chr1:20355975..20355980, - |
| 3.44e-36 | FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_510e96342aadfe9ae79229eaa60cd7b2 | p@chr1:20355975..20355980, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr8:11952680..11952690,+#_078d03581eae64c9d38177b7aac3b452 | p@chr8:11952680..11952690, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr8:11952680..11952690,+#_078d03581eae64c9d38177b7aac3b452 | p@chr8:11952680..11952690, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr10:90644180..90644195,-#_3d1322044f637c1ca8ba8ca5c42dae13 | p@chr10:90644180..90644195, - |
| 4.74e-34 | FFCP PHASE1:Mm9::chr10:90644180..90644195,-#_3d1322044f637c1ca8ba8ca5c42dae13 | p@chr10:90644180..90644195, - |
| 4.74e-34 | FFCP PHASE2:Mm9::chr16:5855821..5855836,+#_3d1322044f637c1ca8ba8ca5c42dae13 | p@chr16:5855821..5855836, + |
| 4.74e-34 | FFCP PHASE1:Mm9::chr16:5855821..5855836,+#_3d1322044f637c1ca8ba8ca5c42dae13 | p@chr16:5855821..5855836, + |
| 6.12e-34 | FFCP PHASE2:Mm9::chr2:31305411..31305419,+#_37cd12cd6c6cbd43d82e34d40e522fac | p@chr2:31305411..31305419, + |
| 6.12e-34 | FFCP PHASE1:Mm9::chr2:31305411..31305419,+#_37cd12cd6c6cbd43d82e34d40e522fac | p@chr2:31305411..31305419, + |
| 1.69e-33 | FFCP PHASE1:Mm9::chr16:5855860..5855872,+#_972279df3eb703d6e4ae317866f0348e | p@chr16:5855860..5855872, + |
| 1.69e-33 | FFCP PHASE2:Mm9::chr16:5855860..5855872,+#_972279df3eb703d6e4ae317866f0348e | p@chr16:5855860..5855872, + |
| 9.86e-33 | FFCP PHASE1:Mm9::chr12:88020400..88020411,+#_ef2ff09b2d3f3c7d932c1ff11a4606a6 | p@chr12:88020400..88020411, + |
| 9.86e-33 | FFCP PHASE2:Mm9::chr12:88020400..88020411,+#_ef2ff09b2d3f3c7d932c1ff11a4606a6 | p@chr12:88020400..88020411, + |
| 1.16e-30 | FFCP PHASE2:Mm9::chr6:52158693..52158704,-#_a63723235cf347210e7aeb56a16b0961 | p3@Hoxa6 |
| 1.16e-30 | FFCP PHASE1:Mm9::chr6:52158693..52158704,-#_a63723235cf347210e7aeb56a16b0961 | p3@Hoxa6 |
| 1.86e-30 | FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_4af6129cf806c90322ffeb066a10300a | p@chr1:237331032..237331036, + |
| 1.86e-30 | FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_4af6129cf806c90322ffeb066a10300a | p@chr1:237331032..237331036, + |
| 3.39e-30 | FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_e481af1e8d4c55cb17a19863b0dadeda | p35@ARHGEF7 |
| 3.39e-30 | FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_e481af1e8d4c55cb17a19863b0dadeda | p35@ARHGEF7 |
| 4.54e-30 | FFCP PHASE1:Mm9::chr11:113795301..113795315,+#_bf2dbec4d29097654ebee985393ba576 | p@chr11:113795301..113795315, + |
| 4.54e-30 | FFCP PHASE2:Mm9::chr11:113795301..113795315,+#_bf2dbec4d29097654ebee985393ba576 | p@chr11:113795301..113795315, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr11:96168366..96168369,+#_bf2dbec4d29097654ebee985393ba576 | p@chr11:96168366..96168369, + |
| 4.54e-30 | FFCP PHASE2:Mm9::chr11:96168366..96168369,+#_bf2dbec4d29097654ebee985393ba576 | p@chr11:96168366..96168369, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr14:20570183..20570190,+#_30709ae75bcd542a5447f32ce7331d9d | p3@Nid2 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr14:20570183..20570190,+#_30709ae75bcd542a5447f32ce7331d9d | p3@Nid2 |
| 5.7e-30 | FFCP PHASE1:Mm9::chr8:11782453..11782481,+#_cc59f6a1f499ad4780a3f2377891e6aa | p25@Arhgef7 |
| 5.7e-30 | FFCP PHASE2:Mm9::chr8:11782453..11782481,+#_cc59f6a1f499ad4780a3f2377891e6aa | p25@Arhgef7 |
| 7.14e-30 | FFCP PHASE2:Mm9::chr7:98820891..98820900,+#_84562891b3a71b92f9a2196e092bd874 | p34@Dlg2 |
| 7.14e-30 | FFCP PHASE1:Mm9::chr7:98820891..98820900,+#_84562891b3a71b92f9a2196e092bd874 | p34@Dlg2 |
| 1.12e-29 | FFCP PHASE1:Mm9::chr6:118116455..118116458,-#_7c35406f019d3d5ed4914586e50019fc | p@chr6:118116455..118116458, - |
| 1.12e-29 | FFCP PHASE2:Mm9::chr6:118116455..118116458,-#_7c35406f019d3d5ed4914586e50019fc | p@chr6:118116455..118116458, - |
| 1.4e-29 | FFCP PHASE1:Mm9::chr2:119624214..119624225,+#_9568de2e010e3c4029dd62c1092b976d | p7@Tyro3 |
| 1.4e-29 | FFCP PHASE2:Mm9::chr2:119624214..119624225,+#_9568de2e010e3c4029dd62c1092b976d | p7@Tyro3 |
| 1.54e-29 | FFCP PHASE2:Mm9::chr5:88358878..88358890,+#_402b33bc7b3723697ac976bcb517de61 | p@chr5:88358878..88358890, + |
| 1.54e-29 | FFCP PHASE1:Mm9::chr5:88358878..88358890,+#_402b33bc7b3723697ac976bcb517de61 | p@chr5:88358878..88358890, + |
| 1.54e-29 | FFCP PHASE2:Mm9::chr1:88007341..88007350,-#_402b33bc7b3723697ac976bcb517de61 | p7@Htr2b |
| 1.54e-29 | FFCP PHASE1:Mm9::chr1:88007341..88007350,-#_402b33bc7b3723697ac976bcb517de61 | p7@Htr2b |
| 2.19e-29 | FFCP PHASE2:Mm9::chr15:90848413..90848436,-#_c73dd3fc046b4369506e46bde3f48a9f | p@chr15:90848413..90848436, - |
| 2.19e-29 | FFCP PHASE1:Mm9::chr15:90848413..90848436,-#_c73dd3fc046b4369506e46bde3f48a9f | p@chr15:90848413..90848436, - |
| 3.42e-29 | FFCP PHASE1:Mm9::chr9:20777404..20777418,+#_ff3a899a4b434e43ca36f9a4c77532bc | p@chr9:20777404..20777418, + |
| 3.42e-29 | FFCP PHASE2:Mm9::chr9:20777404..20777418,+#_ff3a899a4b434e43ca36f9a4c77532bc | p@chr9:20777404..20777418, + |
| 7.38e-28 | FFCP PHASE1:Mm9::chr6:52134126..52134150,-#_a1a67706a4edf700f4e50e18af0397d2 | p3@Hoxa3 |
| 7.38e-28 | FFCP PHASE2:Mm9::chr6:52134126..52134150,-#_a1a67706a4edf700f4e50e18af0397d2 | p3@Hoxa3 |
| 9.07e-28 | FFCP PHASE2:Mm9::chr11:106874215..106874219,+#_9ab5bec2ca5aad3176753199146a24f8 | p@chr11:106874215..106874219, + |
| 9.07e-28 | FFCP PHASE1:Mm9::chr11:106874215..106874219,+#_9ab5bec2ca5aad3176753199146a24f8 | p@chr11:106874215..106874219, + |
| 1.11e-27 | FFCP PHASE1:Mm9::chr5:46030754..46030764,-#_f4c02b4c7b9fb097c9ae41b4cdbfc2d2 | p9@Fam184b |
| 1.11e-27 | FFCP PHASE2:Mm9::chr5:46030754..46030764,-#_f4c02b4c7b9fb097c9ae41b4cdbfc2d2 | p9@Fam184b |
| 1.37e-27 | FFCP PHASE1:Mm9::chr11:96175972..96175978,+#_748dad2a2c212ee02c321b75ee062f6e | p@chr11:96175972..96175978, + |
| 1.37e-27 | FFCP PHASE2:Mm9::chr11:96175972..96175978,+#_748dad2a2c212ee02c321b75ee062f6e | p@chr11:96175972..96175978, + |
| 2.06e-27 | FFCP PHASE1:Mm9::chr5:67486110..67486118,-#_60bf5bb2ce2c9433f29a41b366fe2636 | p@chr5:67486110..67486118, - |
| 2.06e-27 | FFCP PHASE2:Mm9::chr5:67486110..67486118,-#_60bf5bb2ce2c9433f29a41b366fe2636 | p@chr5:67486110..67486118, - |
| 2.72e-27 | FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_e0714410b8508837cd3ba66c92acfdfd | p2@KRT12 |
| 2.72e-27 | FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_e0714410b8508837cd3ba66c92acfdfd | p@chr6:6739548..6739577, - |
| 2.72e-27 | FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_e0714410b8508837cd3ba66c92acfdfd | p@chr6:6739548..6739577, - |
| 2.72e-27 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_e0714410b8508837cd3ba66c92acfdfd | p9@NPPA |
| 2.72e-27 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_e0714410b8508837cd3ba66c92acfdfd | p9@NPPA |
| 2.72e-27 | FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_e0714410b8508837cd3ba66c92acfdfd | p2@KRT12 |
| 2.72e-27 | FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_e0714410b8508837cd3ba66c92acfdfd | p@chr2:18116344..18116353, + |
| 2.72e-27 | FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_e0714410b8508837cd3ba66c92acfdfd | p@chr2:18116344..18116353, + |
| 5.7e-27 | FFCP PHASE1:Mm9::chr1:65358027..65358031,+#_8513db336bb406b46f30ebe73dd5771e | p1@Pth2r |
| 5.7e-27 | FFCP PHASE2:Mm9::chr1:65358027..65358031,+#_8513db336bb406b46f30ebe73dd5771e | p1@Pth2r |
| 8.55e-27 | FFCP PHASE1:Mm9::chr3:59108872..59108875,+#_dbe5f3aaac88c9e347730ca9298d7d1f | p@chr3:59108872..59108875, + |
| 8.55e-27 | FFCP PHASE2:Mm9::chr3:59108872..59108875,+#_dbe5f3aaac88c9e347730ca9298d7d1f | p@chr3:59108872..59108875, + |
| 1.84e-26 | FFCP PHASE1:Hg19::chr11:46337652..46337682,+#_79f6e4df3e719e99edc1f4488068f0d1 | p16@CREB3L1 |
| 1.84e-26 | FFCP PHASE2:Hg19::chr11:46337652..46337682,+#_79f6e4df3e719e99edc1f4488068f0d1 | p16@CREB3L1 |
| 3.49e-26 | FFCP PHASE1:Mm9::chr1:94648758..94648763,+#_32bf6f3392ff31961b00e7e55bec4546 | p@chr1:94648758..94648763, + |
| 3.49e-26 | FFCP PHASE2:Mm9::chr1:94648758..94648763,+#_32bf6f3392ff31961b00e7e55bec4546 | p@chr1:94648758..94648763, + |
| 3.6e-26 | FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_538546b31537c16af7f513ad73b2cbba | p@chrX:112324334..112324339, - |
| 3.6e-26 | FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_538546b31537c16af7f513ad73b2cbba | p@chrX:112324334..112324339, - |
| 4.66e-26 | FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_67f3baabc5e2aad63e88d87b8226fb2a | p11@SLC4A3 |
| 4.66e-26 | FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_67f3baabc5e2aad63e88d87b8226fb2a | p11@SLC4A3 |
