FFCP PHASE1:Hg19::chr17:39646159..39646164,-: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=8689 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=6454 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O76013 | ||
|association_with_transcript=-43bp_to_ENST00000328119,NM_003771,uc002hwt.2_5end | |association_with_transcript=-43bp_to_ENST00000328119,NM_003771,uc002hwt.2_5end | ||
|cluster_id=chr17:39646159..39646164,- | |cluster_id=chr17:39646159..39646164,- | ||
Latest revision as of 05:05, 20 September 2015
| Short description: | p1@KRT36 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_KRT36_5end |
| Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
| Association with transcript: | -43bp_to_ENST00000328119, NM_003771, uc002hwt.2_5end |
| EntrezGene: | KRT36 |
| HGNC: | 6454 |
| UniProt: | O76013 |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p1@KRT36 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chordate pharynx | 6.89e-53 | 10 |
| pharyngeal region of foregut | 6.89e-53 | 10 |
| pharynx | 3.65e-48 | 11 |
| tongue | 6.25e-45 | 3 |
| gustatory system | 6.25e-45 | 3 |
| future tongue | 6.25e-45 | 3 |
| thymus | 1.38e-33 | 4 |
| hemolymphoid system gland | 1.38e-33 | 4 |
| thymic region | 1.38e-33 | 4 |
| pharyngeal gland | 1.38e-33 | 4 |
Showing 1 to 10 of 29 entries
| Ontology term | p-value | n |
|---|---|---|
| skin squamous cell carcinoma | 7.06e-34 | 1 |
| keratoacanthoma | 7.06e-34 | 1 |
| skin carcinoma | 1.07e-17 | 2 |
| skin cancer | 1.07e-17 | 2 |
| integumentary system cancer | 1.07e-17 | 2 |
| cervical cancer | 5.73e-08 | 5 |
Showing 1 to 6 of 6 entries
