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{{UBERON
{{UBERON
|id=UBERON:0002499
|alt_id=UBERON:MA_0002809-FMA_61259
|name=cochlear labyrinth
|namespace=
|def="For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
|xref=BTO:0004686;;FMA:61259;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png;;MA:0002809;;ncithesaurus:Cochlear_Labyrinth
|is_a=UBERON:0000064;;UBERON:0004120;;UBERON:0004121
|synonym=
|comment=WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
|comment=WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
|alt_id=UBERON:MA_0002809-FMA_61259
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002499
|is_a=UBERON:0000064 ;;UBERON:0004121 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001844;;UBERON:0001849
|name=cochlear labyrinth
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001849
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym=
|union_of=
|xref=BTO:0004686;;FMA:61259;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png;;MA:0002809;;ncithesaurus:Cochlear_Labyrinth
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:cochlear labyrinth
Namespace:FANTOM
Definition:"For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
Xrefs:
links:

BTO:0004686
FMA:61259
[ 200px-Gray923.png 200px-Gray923.png]
MA:0002809

ncithesaurus:Cochlear_Labyrinth
Comments:WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
Alt_id: UBERON:MA_0002809-FMA_61259
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001849(membranous labyrinth)



Children

part of:UBERON:0001855 (cochlear duct of membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002499 (cochlear labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_6cfa43aecdd2f27d4d49a209213cdca5p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_6cfa43aecdd2f27d4d49a209213cdca5p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_6cfa43aecdd2f27d4d49a209213cdca5p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_6cfa43aecdd2f27d4d49a209213cdca5p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_6cfa43aecdd2f27d4d49a209213cdca5p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_6cfa43aecdd2f27d4d49a209213cdca5p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_6cfa43aecdd2f27d4d49a209213cdca5p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_6cfa43aecdd2f27d4d49a209213cdca5p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_6cfa43aecdd2f27d4d49a209213cdca5p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_6cfa43aecdd2f27d4d49a209213cdca5p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_6cfa43aecdd2f27d4d49a209213cdca5p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_6cfa43aecdd2f27d4d49a209213cdca5p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_6cfa43aecdd2f27d4d49a209213cdca5p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_6cfa43aecdd2f27d4d49a209213cdca5p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_6cfa43aecdd2f27d4d49a209213cdca5p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_6cfa43aecdd2f27d4d49a209213cdca5p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_6cfa43aecdd2f27d4d49a209213cdca5p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_6cfa43aecdd2f27d4d49a209213cdca5p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_6cfa43aecdd2f27d4d49a209213cdca5p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_6cfa43aecdd2f27d4d49a209213cdca5p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_6cfa43aecdd2f27d4d49a209213cdca5p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_6cfa43aecdd2f27d4d49a209213cdca5p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_6cfa43aecdd2f27d4d49a209213cdca5p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_6cfa43aecdd2f27d4d49a209213cdca5p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_6cfa43aecdd2f27d4d49a209213cdca5p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_6cfa43aecdd2f27d4d49a209213cdca5p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_6cfa43aecdd2f27d4d49a209213cdca5p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_6cfa43aecdd2f27d4d49a209213cdca5p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_6cfa43aecdd2f27d4d49a209213cdca5p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_6cfa43aecdd2f27d4d49a209213cdca5p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_6cfa43aecdd2f27d4d49a209213cdca5p@chr13:78257518..78257522, +

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