FFCP PHASE1:Hg19::chr11:65660606..65660635,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:65660606..65660635,- to FFCP PHASE1:Hg19::chr11:65660606..65660635,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr11:65660606..65660635,- | |||
|coexpression_cluster_id=C3190 | |||
|description=CAGE_peak_at_chr11:65660606..65660635,- | |||
|id=chr11:65660606..65660635,- | |||
|ontology_enrichment_celltype=CL:0000548!5.57e-30!679;CL:0000004!5.57e-30!679;CL:0000255!5.57e-30!679;CL:0000012!1.48e-29!682;CL:0000144!2.41e-21!625;CL:0002371!1.42e-19!591;CL:0000003!2.17e-18!722;CL:0000063!1.69e-17!578;CL:0000220!1.08e-16!246;CL:0002321!2.89e-16!248;CL:0000066!3.50e-13!254;CL:0000055!6.81e-13!180;CL:0000222!2.29e-11!119;CL:0000076!4.69e-10!62;CL:0002057!4.34e-08!42;CL:0000057!5.88e-08!75;CL:0000860!1.09e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.30e-12;33!CL:0002057;3.30e-12;33!CL:0000473;7.40e-08;39!CL:0000234;7.40e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.61e-10,42;CL:0002057,1.61e-10,42;CL:0000222,1.65e-08,121;CL:0000473,4.56e-08,48;CL:0000234,4.56e-08,48;CL:0002321,8.69e-08,250;CL:0000076,9.79e-08,63;CL:0000057,9.28e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;5.73e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!1.07e-10!42;UBERON:0003509!1.07e-10!42;UBERON:0004572!1.07e-10!42;UBERON:0000926!1.20e-10!448;UBERON:0004120!1.20e-10!448;UBERON:0006603!1.20e-10!448;UBERON:0001981!8.36e-09!60;UBERON:0007500!8.36e-09!60;UBERON:0004537!8.36e-09!60;UBERON:0006965!8.36e-09!60;UBERON:0004573!9.00e-09!33;UBERON:0004571!9.00e-09!33;UBERON:0000055!2.21e-08!69;UBERON:0000467!3.07e-08!625;UBERON:0000480!4.62e-08!626;UBERON:0000486!7.26e-08!82;UBERON:0002049!8.15e-08!79;UBERON:0007798!8.15e-08!79;UBERON:0005256!1.36e-07!143;UBERON:0002204!1.42e-07!167;UBERON:0003102!1.45e-07!95;UBERON:0000914!1.56e-07!83;UBERON:0002329!1.56e-07!83;UBERON:0003077!1.56e-07!83;UBERON:0003059!1.56e-07!83;UBERON:0007282!1.56e-07!83;UBERON:0009618!1.56e-07!83;UBERON:0007285!1.56e-07!83;UBERON:0003914!4.38e-07!118;UBERON:0002100!5.25e-07!216;UBERON:0004290!8.21e-07!70 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.38e-08,42;UBERON:0003509,1.38e-08,42;UBERON:0004572,1.38e-08,42;UBERON:0002204,2.82e-08,167;UBERON:0007503,5.31e-07,78;UBERON:0000926,6.68e-07,315;UBERON:0004120,6.68e-07,315;UBERON:0006603,6.68e-07,315 | |||
|phase1_expression=0.54503513781167,2.99740733447376,0.704772020479856,1.0007329835313,0.446961094427288,0,0,1.26343974685366,0.261185628199839,1.47440361900905,4.88460817580699,0.218441372130172,0.527533956456907,0.37129905888014,0,1.34465029290355,3.01347264011988,0.730310090387373,0.975865597581014,0.738726348460727,2.85600967741954,0.626909442956176,0.572471974262113,1.09499540058307,1.00434111675842,0.305653622991805,0.410502947249729,0.157421562627358,0.393364276848904,0,0.154816123316076,1.83884244895785,2.71085326900425,2.58827807116751,0,0,0.293600439334847,0.553995408531877,1.40381113229099,1.08505435357926,0,0,0,0.726991193897824,0.755751887377619,1.69808842831471,3.71886459049095,4.93401465626191,1.54853185447552,6.32923263108731,3.58624989140741,1.89185783910868,2.41321976515633,1.93645405075148,5.41705946377367,3.57660445130949,3.0019676506363,0.449446968890169,6.12167784741805,1.60464513538047,1.27867425159808,1.9791078011203,0.997318288108159,1.70489900213078,3.77272010217159,5.6738522469114,6.22822248995575,7.78870862295904,8.34372669472322,3.25783267057675,4.84319602106695,3.68277635987565,3.48108626184973,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,0,1.73815822752988,2.3858578411533,0,0.567208902984407,1.55210578223795,0.263504357079378,0,1.45718115317017,0.370784442784429,0,0,0.26591592103773,0,0,0,0.596287222100115,0.860234595106124,0.694281003215189,1.13061588384802,2.51699661725944,2.47606237746061,2.08994966536811,0,0.71153252537342,0.33472061276467,0,0.760272105718513,0.488124115096339,1.83831540172934,4.0507097394088,0.803697554556718,0.898117490504679,0.563057402416611,0,1.89853131913626,0.549605231791222,1.31780417436063,0,0,0,1.77282716330412,0.397227542439656,0.286836620748814,2.83734705758686,0.560677600142307,0,1.2333377420858,0.311211035399766,0.269421344139376,0,0.151357427644931,0,2.57753575017176,1.5608003841516,1.71141546463335,4.03511437489863,4.46251094846307,3.88495066483516,4.9157782345787,1.83738754129404,6.87872176945901,1.34323515528495,0,1.48360157567134,2.73048408581408,0.718618141816238,1.17835279767846,6.25592599359821,0.831192346452549,0.438977620880838,1.83892677479412,1.35214253015937,0.226864366320042,1.61450672119976,0.213557388818567,0.635795703478686,0,1.23663035086127,0,0.37223371266318,0.843881661206331,0.779496041289589,2.27190396819703,0.552299391853796,0.80823028409406,1.06502877754984,1.41052937518696,1.01736355386293,0.57978255948989,0.272746120590835,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0.756962552626885,0,1.56449532329816,0.643240938192885,9.66944449467364,0.464367928031979,0,0.118306800039844,0.168584690078102,0,0.882351781859152,0.653638332277218,0,0.674156540800822,0.196221465125346,1.15424147083917,0.738155454624648,2.80483547606892,0,0,0,0,0,0,0,0.514703430895577,1.09750285408626,1.1240175325762,4.72486170334665,1.38882667737794,1.95484983186195,4.15973914111831,0,0.463721619900307,0,0.721832238805369,0.462985512576611,0.380508304469197,0,0,0,0,0,0.93733833986777,0.16798212819886,1.27597587518148,1.79117045405697,3.19697332365358,1.91691339582606,0.985326475791887,0,0.207328115540772,0,0.37872730027914,0.126995788584338,1.14596527667483,0,3.4214489204541,2.67351481028641,1.20137223137567,0.857479297891735,1.23344192779897,0,1.98013371716565,0.904902010304444,0,2.535908257668,0.26593811658487,3.12022310734098,1.28603687131071,4.25547396069835,4.26275486425759,0.428933980974443,0.542621605391443,0,1.30294473717494,0,0,0.602878754119172,0.871533458600294,1.19967589418468,0,0,0,1.67737398844108,0,2.85273810081437,1.15825045334063,4.52047909610843,0.716243852959582,0.112085143993527,0,0,0.128343036279748,1.01637849688985,0,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0.414415513436035,0.12269149171914,0,1.35632511849868,1.03985430765404,4.28229573113188,0.630809660135739,1.05427273493442,0.601892199455438,0,0,2.65690239414175,0.553107505625109,1.30325421702124,0.391602314925481,0,0,0.215714200818617,0.106727557803444,0.606255142892519,0,0.30239029332968,0,0,0.561320188866147,0.384417447767103,0.511707249066704,1.12597744800525,0,4.1636617326717,1.77561725313127,1.31403449622095,5.71179872101983,2.09178681227927,0.241718899183244,0.802025881213139,1.28913384510255,1.03333003348146,5.46273504020151,0.786746489756545,1.80479845162965,1.38627606787947,3.13739907670742,1.46139224653261,0.844413031143006,1.13733384070897,1.87103075804167,1.94324324491925,0,0.812839312631559,0,0.509752546090077,4.98645605357235,2.46262230194396,0,0,0.769350375349168,0.656029291399411,1.30151357865721,0.103041011647722,0.366277859273374,0,2.29706215198469,7.15066270640173,1.6068392984416,0.193341436584244,0.154048617114644,1.07452572308291,2.61889487720608,0.214840489736547,0.145016693914229,0.511359764496605,0.0890320356467374,0.495854746082934,1.15314040419064,0,0.4046311234222,5.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| ||
|short_description=p@chr11:65660606..65660635,- | |||
}} | }} |
Latest revision as of 00:52, 24 July 2015
Short description: | p@chr11:65660606..65660635, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:65660606..65660635, - |
Coexpression cluster: | C3190_papillary_leiomyoma_mesothelioma_meningioma_myxofibrosarcoma_squamous_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.61e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-10 | 42 |
mesodermal cell | 1.65e-08 | 121 |
defensive cell | 4.56e-08 | 48 |
phagocyte | 4.56e-08 | 48 |
embryonic cell | 8.69e-08 | 250 |
squamous epithelial cell | 9.79e-08 | 63 |
fibroblast | 9.28e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
artery | 1.38e-08 | 42 |
arterial blood vessel | 1.38e-08 | 42 |
arterial system | 1.38e-08 | 42 |
musculoskeletal system | 2.82e-08 | 167 |
epithelial vesicle | 5.31e-07 | 78 |
mesoderm | 6.68e-07 | 315 |
mesoderm-derived structure | 6.68e-07 | 315 |
presumptive mesoderm | 6.68e-07 | 315 |