FFCP PHASE1:Hg19::chr15:63796918..63796921,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:63796918..63796921,+ to FFCP PHASE1:Hg19::chr15:63796918..63796921,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9960 | |EntrezGene=9960 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12626 | |HGNC=12626 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000559192_5end | |||
|cluster_id=chr15:63796918..63796921,+ | |||
|description=CAGE_peak_6_at_USP3_5end | |||
|id=chr15:63796918..63796921,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.00e-20!42;CL:0000860!9.54e-19!45;CL:0000766!1.22e-12!76;CL:0002194!2.97e-12!63;CL:0000576!2.97e-12!63;CL:0000040!2.97e-12!63;CL:0000559!2.97e-12!63;CL:0002009!3.16e-12!65;CL:0000557!4.35e-10!71;CL:0000839!1.17e-09!70;CL:0000763!8.15e-09!112;CL:0000049!8.15e-09!112;CL:0002087!2.34e-08!119;CL:0000738!2.57e-08!140;CL:0002393!2.73e-07!9;CL:0002397!2.73e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;2.17e-20;48!CL:0000860;3.58e-20;33!CL:0002057;3.58e-20;33!CL:0000766;2.46e-14;69!CL:0000473;2.16e-13;39!CL:0000234;2.16e-13;39!CL:0000094;4.03e-13;8!CL:0000875;1.40e-12;3!CL:0002396;1.40e-12;3!CL:0002393;3.51e-11;6!CL:0002397;3.51e-11;6!CL:0000081;1.88e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.31e-38,42;CL:0002057,6.31e-38,42;CL:0000473,1.58e-32,48;CL:0000234,1.58e-32,48;CL:0000766,6.78e-32,72;CL:0002194,5.60e-25,59;CL:0000576,5.60e-25,59;CL:0000040,5.60e-25,59;CL:0000559,5.60e-25,59;CL:0002009,5.27e-24,61;CL:0000839,7.93e-22,66;CL:0000557,1.98e-21,67;CL:0002393,3.39e-21,9;CL:0002397,3.39e-21,9;CL:0000763,3.02e-19,108;CL:0000049,3.02e-19,108;CL:0000738,3.54e-18,136;CL:0002087,2.48e-14,115;CL:0000037,1.95e-13,168;CL:0000094,3.33e-13,8;CL:0002032,4.18e-13,161;CL:0000837,4.18e-13,161;CL:0000875,1.11e-12,3;CL:0002396,1.11e-12,3;CL:0000988,2.05e-12,177;CL:0002031,3.38e-12,120;CL:0000081,1.64e-09,11 | |||
|ontology_enrichment_development_v019=CL:0002057;2.61e-23;42!UBERON:0006215;2.04e-13;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.31e-11!112;UBERON:0002390!1.95e-09!102;UBERON:0003061!1.95e-09!102;UBERON:0002371!5.30e-08!80;UBERON:0002405!7.79e-08!115;UBERON:0001474!1.20e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;6.57e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.08e-18,82;UBERON:0002371,2.52e-18,76;UBERON:0004765,2.54e-16,90;UBERON:0002390,1.27e-14,98;UBERON:0003061,1.27e-14,98;UBERON:0001434,3.48e-14,100;UBERON:0002405,4.25e-14,93;UBERON:0002193,8.38e-13,108;UBERON:0002037,5.18e-07,6;UBERON:0006215,5.18e-07,6 | |||
|phase1_expression=0,0.642301571672949,0.281908808191942,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0.229240217243854,0.328402357799783,0.157421562627358,0.786728553697808,1.53531759238885,2.01260960310899,0,0,0.369754010166788,0,0.426507697462265,0,3.32397245119126,1.40381113229099,0.434021741431704,0,0,0.257575567634187,1.74477886535478,0.755751887377619,1.94067248950253,0.464858073811369,0.822335776043652,0.929119112685311,0.863077176966451,1.5369642391746,1.41889337933151,0.689491361473237,0.645484683583826,0,1.12945403725563,0.272906150057846,1.79778787556068,1.22433556948361,2.24650318953266,0.639337125799041,0.989553900560148,0.997318288108159,1.70489900213078,0.580418477257168,0,0.622822248995575,0,1.0429658368404,1.08594422352558,0,0.368277635987565,0.949387162322653,1.05627643155971,1.4882300997553,0.838634582033504,2.2465726229299,2.55300717830561,2.25015821375912,1.14005097496499,1.19350006319454,1.82664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,1.68152568894461,0,0.393419540227666,0,1.02800749499755,0,0.651844533267181,0.473447805734733,0,0.222820913770347,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0.383220493601921,0.34362744548263,0.759059076058509,0,0,0,0.301150238155546,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0.639312809217652,0,1.00267582127178,0.144846518960824,0,0.486634870302636,0.189069634328136,0,0.087834785693126,0.0654895377488563,0,0,0,0.522389211897802,0,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0.516833518338658,0.71153252537342,0.33472061276467,0,0,0.24406205754817,0,0,0.267899184852239,0,0.112611480483322,0,0,0.366403487860815,0,3.87780264148325,0,0,0,0.529636723252875,0.286836620748814,0.354668382198357,0.560677600142307,1.06748995729705,0,0.311211035399766,0.269421344139376,0.163461903113459,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,0.204154171254893,0.245668634623536,0.206651562351531,2.37600571456411,0,0,0.718618141816238,0.168336113954066,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0.257640540045629,0.37223371266318,0.675105328965065,0.194874010322397,0,0.368199594569197,0,0,0,0,0,0.272746120590835,0.286804595389004,0,0.132529768321485,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0.109750285408626,1.1240175325762,0.100528972411631,0.462942225792648,0.325808305310325,0,0,0.115930404975077,0.352226082707465,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0.738651018262192,0,0.148631162288728,0,0.16798212819886,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0,0,0,0.25248486685276,0,0,0,0,0.205654985406647,0,0,0.224262168690721,0,0.22001485746285,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.112085143993527,0.788123040807709,0,1.15508732651774,0.254094624222463,0,0,0.167516265334349,0.637938751653163,1.49801404789436,0,2.07207756718018,0,0,0,0.207970861530807,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0,0,1.24060815673732,0.647142602455851,0.74709290462411,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0.308419387605311,0,0.657017248110473,0,0.116210378459959,0.483437798366489,0,0.0920809889358963,0,0.182091168006717,0.131124414959424,0,0.539107359730903,0,0,0.633309773357254,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0.082509499920588,0,0.650060246036521,0,0.386682873168488,0,0.767518373630648,0.551346289938122,0.214840489736547,0,0.426133137080504,0.178064071293475,0.330569830721956,0.576570202095319,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0,0.392996164052485,0,0.354761064070598,0,0,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,0,0.540031437238115,0.79312517629427,0.106824071127473,0.962479855263359,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0.199579371432817,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0.1605880751037,0.201799707191048,0.851692475380653,0.343505344755765,0,0,0.333698283423817,0,0,0,0.540911356951966,0.66614393599564,0,0,0.146508179271894,0.121360521749513,0.66866030566487,0,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0.306806047506464,0.123084805461069,0,0.0898683511473268,1.61119057208048,0,0.394573622547734,0,0,0,0.09276809816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| |phase1_expression=0,0.642301571672949,0.281908808191942,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0.229240217243854,0.328402357799783,0.157421562627358,0.786728553697808,1.53531759238885,2.01260960310899,0,0,0.369754010166788,0,0.426507697462265,0,3.32397245119126,1.40381113229099,0.434021741431704,0,0,0.257575567634187,1.74477886535478,0.755751887377619,1.94067248950253,0.464858073811369,0.822335776043652,0.929119112685311,0.863077176966451,1.5369642391746,1.41889337933151,0.689491361473237,0.645484683583826,0,1.12945403725563,0.272906150057846,1.79778787556068,1.22433556948361,2.24650318953266,0.639337125799041,0.989553900560148,0.997318288108159,1.70489900213078,0.580418477257168,0,0.622822248995575,0,1.0429658368404,1.08594422352558,0,0.368277635987565,0.949387162322653,1.05627643155971,1.4882300997553,0.838634582033504,2.2465726229299,2.55300717830561,2.25015821375912,1.14005097496499,1.19350006319454,1.82664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,1.68152568894461,0,0.393419540227666,0,1.02800749499755,0,0.651844533267181,0.473447805734733,0,0.222820913770347,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0.267540828089713,0,0.226618685395132,0.383220493601921,0.34362744548263,0.759059076058509,0,0,0,0.301150238155546,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0.639312809217652,0,1.00267582127178,0.144846518960824,0,0.486634870302636,0.189069634328136,0,0.087834785693126,0.0654895377488563,0,0,0,0.522389211897802,0,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0.516833518338658,0.71153252537342,0.33472061276467,0,0,0.24406205754817,0,0,0.267899184852239,0,0.112611480483322,0,0,0.366403487860815,0,3.87780264148325,0,0,0,0.529636723252875,0.286836620748814,0.354668382198357,0.560677600142307,1.06748995729705,0,0.311211035399766,0.269421344139376,0.163461903113459,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,0.204154171254893,0.245668634623536,0.206651562351531,2.37600571456411,0,0,0.718618141816238,0.168336113954066,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0.257640540045629,0.37223371266318,0.675105328965065,0.194874010322397,0,0.368199594569197,0,0,0,0,0,0.272746120590835,0.286804595389004,0,0.132529768321485,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0.109750285408626,1.1240175325762,0.100528972411631,0.462942225792648,0.325808305310325,0,0,0.115930404975077,0.352226082707465,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0.738651018262192,0,0.148631162288728,0,0.16798212819886,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0,0,0,0.25248486685276,0,0,0,0,0.205654985406647,0,0,0.224262168690721,0,0.22001485746285,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.112085143993527,0.788123040807709,0,1.15508732651774,0.254094624222463,0,0,0.167516265334349,0.637938751653163,1.49801404789436,0,2.07207756718018,0,0,0,0.207970861530807,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0,0,1.24060815673732,0.647142602455851,0.74709290462411,0,0,0,0.248107807818777,0.460385919864187,0,0,0,0,0,0.308419387605311,0,0.657017248110473,0,0.116210378459959,0.483437798366489,0,0.0920809889358963,0,0.182091168006717,0.131124414959424,0,0.539107359730903,0,0,0.633309773357254,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0.082509499920588,0,0.650060246036521,0,0.386682873168488,0,0.767518373630648,0.551346289938122,0.214840489736547,0,0.426133137080504,0.178064071293475,0.330569830721956,0.576570202095319,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0.318203247925937,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0,0.392996164052485,0,0.354761064070598,0,0,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,0,0.540031437238115,0.79312517629427,0.106824071127473,0.962479855263359,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0.199579371432817,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0.1605880751037,0.201799707191048,0.851692475380653,0.343505344755765,0,0,0.333698283423817,0,0,0,0.540911356951966,0.66614393599564,0,0,0.146508179271894,0.121360521749513,0.66866030566487,0,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0.111308705022906,0,0,0.19924798825107,0,0.251932747854276,0.306806047506464,0.123084805461069,0,0.0898683511473268,1.61119057208048,0,0.394573622547734,0,0,0,0.09276809816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| ||
|short_description=p6@USP3 | |||
}} | }} |
Latest revision as of 12:43, 18 September 2015
Short description: | p6@USP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_USP3_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000559192_5end |
EntrezGene: | USP3 |
HGNC: | 12626 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.31e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.31e-38 | 42 |
defensive cell | 1.58e-32 | 48 |
phagocyte | 1.58e-32 | 48 |
myeloid leukocyte | 6.78e-32 | 72 |
monopoietic cell | 5.60e-25 | 59 |
monocyte | 5.60e-25 | 59 |
monoblast | 5.60e-25 | 59 |
promonocyte | 5.60e-25 | 59 |
macrophage dendritic cell progenitor | 5.27e-24 | 61 |
myeloid lineage restricted progenitor cell | 7.93e-22 | 66 |
granulocyte monocyte progenitor cell | 1.98e-21 | 67 |
intermediate monocyte | 3.39e-21 | 9 |
CD14-positive, CD16-positive monocyte | 3.39e-21 | 9 |
myeloid cell | 3.02e-19 | 108 |
common myeloid progenitor | 3.02e-19 | 108 |
leukocyte | 3.54e-18 | 136 |
nongranular leukocyte | 2.48e-14 | 115 |
hematopoietic stem cell | 1.95e-13 | 168 |
granulocyte | 3.33e-13 | 8 |
hematopoietic oligopotent progenitor cell | 4.18e-13 | 161 |
hematopoietic multipotent progenitor cell | 4.18e-13 | 161 |
non-classical monocyte | 1.11e-12 | 3 |
CD14-low, CD16-positive monocyte | 1.11e-12 | 3 |
hematopoietic cell | 2.05e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 3.38e-12 | 120 |
blood cell | 1.64e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.08e-18 | 82 |
bone marrow | 2.52e-18 | 76 |
skeletal element | 2.54e-16 | 90 |
hematopoietic system | 1.27e-14 | 98 |
blood island | 1.27e-14 | 98 |
skeletal system | 3.48e-14 | 100 |
immune system | 4.25e-14 | 93 |
hemolymphoid system | 8.38e-13 | 108 |
cerebellum | 5.18e-07 | 6 |
rhombic lip | 5.18e-07 | 6 |