FFCP PHASE1:Hg19::chr1:182922263..182922314,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:182922263..182922314,- to FFCP PHASE1:Hg19::chr1:182922263..182922314,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81626 | |EntrezGene=81626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16788 | |HGNC=16788 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000497549_5end | |||
|cluster_id=chr1:182922263..182922314,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_SHCBP1L_5end | |||
|id=chr1:182922263..182922314,- | |||
|ontology_enrichment_celltype=CL:1000449!3.35e-09!16;CL:1000497!6.76e-08!18;CL:0002518!6.76e-08!18;CL:0002681!1.54e-07!13;CL:0002584!1.54e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002535;7.09e-25;2!CL:0002581;3.99e-13;1!CL:1000415;2.91e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,7.09e-25,2;CL:0002581,3.33e-13,1;CL:1000415,2.91e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0007297;4.69e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4362;1.54e-10;5!DOID:120;3.16e-07;27!DOID:193;9.72e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.54e-10,5;DOID:120,3.41e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0006555!1.68e-10!17;UBERON:0005103!1.68e-10!17;UBERON:0000083!1.68e-10!17;UBERON:0009201!1.68e-10!17;UBERON:0004819!1.68e-10!17;UBERON:0006553!1.68e-10!17;UBERON:0003074!1.68e-10!17;UBERON:0003060!1.68e-10!17;UBERON:0004876!3.30e-10!20;UBERON:0000080!9.42e-10!18;UBERON:0002120!9.42e-10!18;UBERON:0004875!9.42e-10!18;UBERON:0005721!9.42e-10!18;UBERON:0005754!9.42e-10!18;UBERON:0007297!9.42e-10!18;UBERON:0004211!3.35e-09!16;UBERON:0001285!3.35e-09!16;UBERON:0007684!3.35e-09!16;UBERON:0003220!3.35e-09!16;UBERON:0004208!3.35e-09!16;UBERON:0000064!2.75e-08!219;UBERON:0003887!6.07e-08!21;UBERON:0001225!1.54e-07!13;UBERON:0008987!1.54e-07!13;UBERON:0000119!3.39e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;7.09e-25;2!UBERON:0004801;7.09e-25;2!UBERON:0001301;7.68e-13;1!UBERON:0003135;2.43e-10;11!UBERON:0003133;1.73e-09;44!UBERON:0004175;3.06e-09;21!UBERON:0000002;6.26e-09;6!UBERON:0001560;6.26e-09;6!UBERON:0005406;3.38e-07;2!UBERON:0000473;5.54e-07;8!UBERON:0000995;7.32e-07;17!UBERON:0000474;8.40e-07;37!UBERON:0005156;9.52e-07;59!UBERON:0000990;9.52e-07;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,7.09e-25,2;UBERON:0004801,7.09e-25,2;UBERON:0003133,8.10e-15,48;UBERON:0001301,9.73e-13,1;UBERON:0005156,6.71e-12,59;UBERON:0000990,6.71e-12,59;UBERON:0004175,1.17e-11,25;UBERON:0003135,2.59e-10,11;UBERON:0000995,3.10e-09,21;UBERON:0000002,6.26e-09,6;UBERON:0001560,6.26e-09,6;UBERON:0005795,7.97e-09,22;UBERON:0003975,7.97e-09,22;UBERON:0003134,7.71e-08,37;UBERON:0000474,7.71e-08,37;UBERON:0003886,1.80e-07,54;UBERON:0005406,3.09e-07,2;UBERON:0006555,4.61e-07,16;UBERON:0004819,4.61e-07,16;UBERON:0003100,4.61e-07,41;UBERON:0000473,5.54e-07,8 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0,0.697801167972428,0.436882744260345,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.684372125364421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,0,0.144846518960824,0,0.486634870302636,0.472674085820339,0.221729397462564,0.175669571386252,66.9303075793312,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.44905874525234,0.225222960966644,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0,0,0,0.587172493218824,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0.718618141816238,0,0.500474079487857,0,0,0,0.150238058906597,0,0.179389635688862,0,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0.303127571446259,0,1.5119514666484,0,0.153461973288062,0,0.256278298511402,0,0,2.96836132889982,0,0.355123450626254,0,0,0.232420756919918,0,0,0,0,0,0,0.451199612907412,0.385076685522074,1.56869953835371,0,0.422206515571503,0,0,0.647747748306418,1.54227252690289,0.541892875087706,0,0.764628819135115,0,0.671624264166535,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0.462145851343933,0.460511024178389,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,2.37571744666111,0,0,0,0,0,0,0.19924798825107,0,11.5889064012967,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,26.1177619741208,1.22308667769421,0,0,0,0,0,0,0,0,0,0,9.19091498853574,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0,0,0.223171457441873,0.403100834920358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0.327872630709804,0,0,0.122026264901963,0.250381861413,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0,0.554805861502613,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0.601030435988874,0,1.22061219961398,0,0,0,0,0,0.686791410365586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,2.2910686854405,0,0,0,0,0,0,0,0,0.485710993059139,0,0,1.42704108933082,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0.752122617877125,135.946984603521,225.357833461346,0,0,0,0.476128862927481,0,0.124149428591716,0,0,0.202117188958219,0,0.684466602170562,0,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0,0.697801167972428,0.436882744260345,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.684372125364421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,0,0.144846518960824,0,0.486634870302636,0.472674085820339,0.221729397462564,0.175669571386252,66.9303075793312,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.44905874525234,0.225222960966644,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0,0,0,0.587172493218824,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0.718618141816238,0,0.500474079487857,0,0,0,0.150238058906597,0,0.179389635688862,0,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0.303127571446259,0,1.5119514666484,0,0.153461973288062,0,0.256278298511402,0,0,2.96836132889982,0,0.355123450626254,0,0,0.232420756919918,0,0,0,0,0,0,0.451199612907412,0.385076685522074,1.56869953835371,0,0.422206515571503,0,0,0.647747748306418,1.54227252690289,0.541892875087706,0,0.764628819135115,0,0.671624264166535,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0.462145851343933,0.460511024178389,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,2.37571744666111,0,0,0,0,0,0,0.19924798825107,0,11.5889064012967,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,26.1177619741208,1.22308667769421,0,0,0,0,0,0,0,0,0,0,9.19091498853574,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0,0,0.223171457441873,0.403100834920358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0.327872630709804,0,0,0.122026264901963,0.250381861413,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0,0.554805861502613,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0.601030435988874,0,1.22061219961398,0,0,0,0,0,0.686791410365586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,2.2910686854405,0,0,0,0,0,0,0,0,0.485710993059139,0,0,1.42704108933082,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0.752122617877125,135.946984603521,225.357833461346,0,0,0,0.476128862927481,0,0.124149428591716,0,0,0.202117188958219,0,0.684466602170562,0,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p1@SHCBP1L | |||
}} | }} |
Latest revision as of 01:37, 19 September 2015
Short description: | p1@SHCBP1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHCBP1L_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000497549_5end |
EntrezGene: | SHCBP1L |
HGNC: | 16788 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 7.09e-25 | 2 |
perirenal preadipocyte | 3.33e-13 | 1 |
epithelial cell of gall bladder | 2.91e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 7.09e-25 | 2 |
cervix epithelium | 7.09e-25 | 2 |
reproductive organ | 8.10e-15 | 48 |
epididymis | 9.73e-13 | 1 |
reproductive structure | 6.71e-12 | 59 |
reproductive system | 6.71e-12 | 59 |
internal genitalia | 1.17e-11 | 25 |
male reproductive organ | 2.59e-10 | 11 |
uterus | 3.10e-09 | 21 |
uterine cervix | 6.26e-09 | 6 |
neck of organ | 6.26e-09 | 6 |
embryonic uterus | 7.97e-09 | 22 |
internal female genitalia | 7.97e-09 | 22 |
female reproductive organ | 7.71e-08 | 37 |
female reproductive system | 7.71e-08 | 37 |
body cavity precursor | 1.80e-07 | 54 |
perirenal fat | 3.09e-07 | 2 |
excretory tube | 4.61e-07 | 16 |
kidney epithelium | 4.61e-07 | 16 |
female organism | 4.61e-07 | 41 |
testis | 5.54e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.54e-10 | 5 |
female reproductive organ cancer | 3.41e-07 | 27 |