FFCP PHASE1:Hg19::chr20:62367972..62367984,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:62367972..62367984,+ to FFCP PHASE1:Hg19::chr20:62367972..62367984,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54923 | |EntrezGene=54923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |HGNC=26016 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H400 | |UniProt=Q9H400 | ||
|association_with_transcript=0bp_to_NM_017806_5end | |||
|cluster_id=chr20:62367972..62367984,+ | |||
|coexpression_cluster_id=C974 | |||
|description=CAGE_peak_3_at_LIME1_5end | |||
|id=chr20:62367972..62367984,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.89e-42!53;CL:0000051!4.89e-42!53;CL:0000838!3.29e-41!52;CL:0000738!2.53e-23!140;CL:0002087!3.98e-22!119;CL:0000791!7.98e-21!18;CL:0000789!7.98e-21!18;CL:0002420!7.98e-21!18;CL:0002419!7.98e-21!18;CL:0000790!7.98e-21!18;CL:0000084!1.73e-20!25;CL:0000827!1.73e-20!25;CL:0000037!4.54e-19!172;CL:0000566!4.54e-19!172;CL:0002031!6.31e-19!124;CL:0000945!1.12e-18!24;CL:0000826!1.12e-18!24;CL:0000988!1.24e-16!182;CL:0002032!3.66e-15!165;CL:0000837!3.66e-15!165;CL:0000625!1.00e-13!11;CL:0000236!5.63e-11!14;CL:0000624!6.77e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;5.95e-32;25!CL:0000791;1.47e-31;18!CL:0000789;1.47e-31;18!CL:0002419;1.47e-31;18!CL:0000542;4.10e-29;53!CL:0000625;1.79e-20;11!CL:0000945;5.60e-18;24!CL:0000236;1.71e-13;13!CL:0000624;2.08e-11;6!CL:0002087;2.28e-08;104!CL:0000784;3.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.17e-54,53;CL:0000051,4.17e-54,53;CL:0000838,7.75e-53,52;CL:0000084,6.39e-32,25;CL:0000827,6.39e-32,25;CL:0000791,1.62e-31,18;CL:0000789,1.62e-31,18;CL:0002420,1.62e-31,18;CL:0002419,1.62e-31,18;CL:0000790,1.62e-31,18;CL:0000738,5.42e-27,136;CL:0002087,3.20e-26,115;CL:0000625,1.87e-20,11;CL:0002031,6.04e-20,120;CL:0000037,1.62e-19,168;CL:0000945,4.98e-18,24;CL:0000826,4.98e-18,24;CL:0000988,1.10e-17,177;CL:0002032,3.58e-15,161;CL:0000837,3.58e-15,161;CL:0000236,2.21e-12,14;CL:0000624,2.11e-11,6;CL:0000784,3.73e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.47e-31;18!CL:0000051;4.10e-29;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.53e-20!115;UBERON:0000178!3.47e-09!15;UBERON:0000179!3.47e-09!15;UBERON:0000463!3.47e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.95e-14;15!UBERON:0000179;3.95e-14;15!UBERON:0000463;3.95e-14;15!UBERON:0002390;1.66e-11;32!UBERON:0002193;8.62e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.63e-14,15;UBERON:0000179,3.63e-14,15;UBERON:0000463,3.63e-14,15;UBERON:0004177,1.42e-08,7;UBERON:0005057,1.42e-08,7;UBERON:0002370,5.32e-08,4;UBERON:0005058,5.32e-08,4;UBERON:0009113,5.32e-08,4;UBERON:0003295,5.32e-08,4;UBERON:0005562,5.32e-08,4;UBERON:0003408,2.04e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.72437970581971,5.99334302984604,6.29686250509434,1.96682138424452,4.98978217526377,1.23852898652861,0,0,0,0.697204805222715,0.710846162437108,0.587200878669695,2.21598163412751,1.20326668482085,0.868043482863407,0.895661896959697,1.94336199611388,0.515151135268373,0,0,0,0,0,0,0,0,0.47296445977717,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,3.82297027883492,5.33705552318133,8.10787422876364,6.80673177961221,6.32227683949932,5.94940385506376,4.77026877267682,0,1.76171156811282,1.52909291250092,1.32171328579026,0,2.63384084775077,5.70458333330116,10.6112905942274,10.2800749499755,15.046784585161,10.1035902656413,16.5706732007157,5.84480185223734,14.2605384813022,14.435689466267,15.5073726208535,7.85331204918545,23.1845288703472,22.3702077802991,4.27538551969558,5.52700035571697,5.79606171470105,8.45233410023744,6.42097987415311,3.1360657141493,14.3902865225909,13.4127172760672,22.3357839563709,11.1328664488581,23.8924060743073,17.5792532541233,15.207232711174,14.3046363123884,14.2065138381404,13.742379920758,18.4686256594333,30.3817358860787,7.66105624253983,10.4301676355568,7.53086900190555,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.24430121722827,0,0.370784442784429,1.29818957461873,0,0.398873881556595,23.1335905576182,26.3117658958859,24.5161950877513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0,1.77236972004421,20.3073025730739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36255431980582,4.53170748464433,7.76259269494262,5.90377966886842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51505644408909,1.72571360654893,5.54983300577911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.784306353074702,0,0,0,2.06082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,6.5968189200182,3.0585488285695,3.41788312304498,7.62341681464925,4.93634727703433,3.8908398671563,9.18053443304795,7.9312517629427,0,0,0,2.22963810150862,0.28853842595289,3.48595032407229,7.81188736371229,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.11134053551235,0.146508179271894,0,4.90350890820905,0,0,0,0,0,0,0,0,0,0.796991953004279,2.76283915531148,0,0,1.72318727645497,0,0.269605053441981,0,0,0.591860433821602,7.18449277040819,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0.60298219312704,0,0.110579259931225,0,1.75508317723178,0,0,0.615602068030377,0,0,0,0,0,0,0,6.13159789174419,0,0.664846727600626,0,0,0,0,0.476809736941136,0,0,0,0,3.98104772431402,1.68069372556344,0,0,0,0,0,0.802577647298789,0.468528891450678,1.64209310294099,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06687918137261,0,0,0,0,0.253243183823515,0,0,2.34798294213288,0.999048047910651,0.144090417154106,0,0,0.14405479798815,0,0,2.58217991539867,2.92887969674533,0,0,0.600420288709789,0.273810757783986,1.27746588066972,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,2.28617996577618,0,0,0,0,0,0,0,0.182248669974074,0,0.315222829196793,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63794020620548,0,0,0.13223260174269,0,0,1.28144895081234,0.314408610199332,1.65695622138878,2.48083010905975,0.395223263795889,0.974340787047167,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0.250381861413,0,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,2.36519416914302,0,0,0,0.276516872303462,0.389720617678777,0.398594520940089,0,0,0,0,0,0,2.2387947355906,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,1.02520268501629,0,0,0,0.578063025868136,0,0.159633859057151,0,0,0.276629009856872,0.645902582527404,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0.443568258651136,0.270150338473579,0.781078098613847,0,0.19024743058172,0,1.09651553371436,0.992422356778588,0,0,0,0,0,0,0,0.806637912890455,0,0.0679697329768317,0.131545547125698,0,0,0.706437835654626,0.942693539496011,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.9164274741762,0,0,0,1.86485443868962,9.75343399858155,0,0,0,1.94284397223656,0,0,0,0,0,0,0.617393264863557,0.218559560503957,0,0,0,0,0,0,0,2.16163011353663,1.28915775947154,0,0,0,0,2.19100916473955,1.83491713361816,0.286679166302903,0,0.543931921527318,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,1.27940389140589,0.23806443146374,14.9200381721174,11.5458968590296,0,0.190941474834495,0,0.870866991587845,1.02669990325584,4.64729165800654,2.07994395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| 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| ||
|short_description=p3@LIME1 | |||
}} | }} |
Latest revision as of 14:02, 17 September 2015
Short description: | p3@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LIME1_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | 0bp_to_NM_017806_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | Q9H400 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.17e-54 | 53 |
common lymphoid progenitor | 4.17e-54 | 53 |
lymphoid lineage restricted progenitor cell | 7.75e-53 | 52 |
T cell | 6.39e-32 | 25 |
pro-T cell | 6.39e-32 | 25 |
mature alpha-beta T cell | 1.62e-31 | 18 |
alpha-beta T cell | 1.62e-31 | 18 |
immature T cell | 1.62e-31 | 18 |
mature T cell | 1.62e-31 | 18 |
immature alpha-beta T cell | 1.62e-31 | 18 |
leukocyte | 5.42e-27 | 136 |
nongranular leukocyte | 3.20e-26 | 115 |
CD8-positive, alpha-beta T cell | 1.87e-20 | 11 |
hematopoietic lineage restricted progenitor cell | 6.04e-20 | 120 |
hematopoietic stem cell | 1.62e-19 | 168 |
lymphocyte of B lineage | 4.98e-18 | 24 |
pro-B cell | 4.98e-18 | 24 |
hematopoietic cell | 1.10e-17 | 177 |
hematopoietic oligopotent progenitor cell | 3.58e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.58e-15 | 161 |
B cell | 2.21e-12 | 14 |
CD4-positive, alpha-beta T cell | 2.11e-11 | 6 |
plasmacytoid dendritic cell | 3.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 3.63e-14 | 15 |
haemolymphatic fluid | 3.63e-14 | 15 |
organism substance | 3.63e-14 | 15 |
hemopoietic organ | 1.42e-08 | 7 |
immune organ | 1.42e-08 | 7 |
thymus | 5.32e-08 | 4 |
hemolymphoid system gland | 5.32e-08 | 4 |
thymic region | 5.32e-08 | 4 |
pharyngeal gland | 5.32e-08 | 4 |
thymus primordium | 5.32e-08 | 4 |
gland of gut | 2.04e-07 | 10 |