FFCP PHASE1:Hg19::chr2:182322911..182322927,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:182322911..182322927,+ to FFCP PHASE1:Hg19::chr2:182322911..182322927,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3676 | |EntrezGene=3676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |HGNC=6140 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000478440_5end | |||
|cluster_id=chr2:182322911..182322927,+ | |||
|coexpression_cluster_id=C1481 | |||
|description=CAGE_peak_12_at_ITGA4_5end | |||
|id=chr2:182322911..182322927,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.10e-63!172;CL:0000566!5.10e-63!172;CL:0000988!3.26e-60!182;CL:0002032!1.43e-58!165;CL:0000837!1.43e-58!165;CL:0000738!2.07e-46!140;CL:0002087!1.09e-40!119;CL:0002031!1.89e-40!124;CL:0000542!5.63e-34!53;CL:0000051!5.63e-34!53;CL:0000838!2.25e-33!52;CL:0000763!7.30e-25!112;CL:0000049!7.30e-25!112;CL:0000084!1.04e-17!25;CL:0000827!1.04e-17!25;CL:0000134!2.17e-17!358;CL:0002320!8.35e-17!365;CL:0000791!9.97e-17!18;CL:0000789!9.97e-17!18;CL:0002420!9.97e-17!18;CL:0002419!9.97e-17!18;CL:0000790!9.97e-17!18;CL:0002057!2.69e-14!42;CL:0000945!4.59e-14!24;CL:0000826!4.59e-14!24;CL:0000219!1.95e-13!390;CL:0000860!1.27e-12!45;CL:0000625!1.64e-12!11;CL:0000766!1.17e-11!76;CL:0000236!1.50e-11!14;CL:0000048!1.52e-11!430;CL:0000034!2.33e-11!444;CL:0000839!2.70e-11!70;CL:0000723!7.93e-11!436;CL:0000557!4.21e-10!71;CL:0002194!2.79e-09!63;CL:0000576!2.79e-09!63;CL:0000040!2.79e-09!63;CL:0000559!2.79e-09!63;CL:0002009!2.84e-09!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.06e-23;18!CL:0000789;1.06e-23;18!CL:0002419;1.06e-23;18!CL:0000084;1.41e-23;25!CL:0000625;3.77e-23;11!CL:0000542;1.12e-22;53!CL:0000236;2.21e-17;13!CL:0000945;1.28e-11;24!CL:0002087;1.12e-08;104!CL:0000988;3.68e-07;177!CL:0000623;5.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.92e-38,52;CL:0000542,2.47e-37,53;CL:0000051,2.47e-37,53;CL:0000037,2.13e-35,168;CL:0000988,1.12e-32,177;CL:0002032,5.97e-32,161;CL:0000837,5.97e-32,161;CL:0002087,3.00e-28,115;CL:0000738,9.59e-26,136;CL:0000791,5.62e-24,18;CL:0000789,5.62e-24,18;CL:0002420,5.62e-24,18;CL:0002419,5.62e-24,18;CL:0000790,5.62e-24,18;CL:0002031,6.54e-24,120;CL:0000084,9.67e-24,25;CL:0000827,9.67e-24,25;CL:0000625,3.31e-23,11;CL:0000236,3.00e-16,14;CL:0000945,8.77e-12,24;CL:0000826,8.77e-12,24;CL:0000134,6.41e-09,354;CL:0002320,6.57e-09,361;CL:0000623,5.28e-07,3;CL:0000825,5.28e-07,3;CL:0000219,8.69e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000790;1.06e-23;18!CL:0000051;1.12e-22;53 | |||
|ontology_enrichment_disease=DOID:2531!1.22e-20!51;DOID:0060083!1.22e-20!51;DOID:1240!1.62e-17!39;DOID:8692!5.65e-15!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;8.23e-10;39!DOID:8692;3.38e-09;31!DOID:2531;1.33e-08;51!DOID:0060083;1.33e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.50e-12,39;DOID:2531,4.25e-12,51;DOID:0060083,4.25e-12,51;DOID:8692,1.47e-09,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.09e-19!102;UBERON:0003061!1.09e-19!102;UBERON:0002193!1.31e-17!112;UBERON:0002384!3.13e-15!375;UBERON:0000178!2.24e-10!15;UBERON:0000179!2.24e-10!15;UBERON:0000463!2.24e-10!15;UBERON:0002371!5.27e-09!80;UBERON:0001474!6.62e-09!86;UBERON:0002405!5.00e-07!115;UBERON:0004177!5.14e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.45e-11;15!UBERON:0000179;1.45e-11;15!UBERON:0000463;1.45e-11;15!UBERON:0002390;8.80e-11;32!UBERON:0004177;4.09e-10;5!UBERON:0005057;4.09e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.21e-11,15;UBERON:0000179,2.21e-11,15;UBERON:0000463,2.21e-11,15;UBERON:0004177,2.64e-10,7;UBERON:0005057,2.64e-10,7;UBERON:0002390,3.78e-09,98;UBERON:0003061,3.78e-09,98;UBERON:0002384,3.07e-08,371;UBERON:0002193,1.17e-07,108 | |||
|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.458480434487708,0.985207073399349,0.472264687882075,0.786728553697808,6.1412703695554,0.309632246632152,0,0,0,0.309868802321207,3.2698923472107,2.64240395401362,0,0.200544447470142,0,0,0,0.515151135268373,0.436194716338694,0,1.21292030593908,0.464858073811369,0,0.309706370895104,0.575384784644301,1.0246428261164,0.47296445977717,0.344745680736619,0.645484683583826,1.35426486594342,0,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0.989553900560148,0.598390972864896,0.852449501065388,0.290209238628584,0.56738522469114,0,0.502497330513487,1.0429658368404,0.868755378820466,0.605399502633369,0.368277635987565,0.316462387440884,1.90129757680748,0.850417199860174,1.67726916406701,1.01095768031846,1.50176892841506,1.6072558669708,1.14005097496499,1.59133341759272,1.0959849225878,0,6.00752472388345,2.66852776159066,4.26730222566507,4.40435585739614,6.8970292794538,1.98313461835459,3.81621501814146,3.98449078376614,1.17447437874188,1.52909291250092,3.96513985737078,1.12101712596307,3.16060901730092,1.96709770113833,1.96505381374582,1.23360899399706,3.8452893939856,0.32592226663359,1.4203434172042,0,2.00538822393312,0.883817722424512,0.886135578334485,1.62482318259009,1.40900451698243,1.8208308658383,1.80881695064044,1.65810010671509,3.76744011455568,1.63115219478266,1.87278579662799,4.18142095219907,6.45863253376127,3.44898444241729,2.40539211837841,10.6268270648191,3.82278497188916,5.20866763085135,4.75226022224187,5.27012916772205,5.37543766848557,7.49584359314075,4.02521328474829,4.92676798152628,3.22570789159572,2.67440195783507,2.46201486600758,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0.715471872916026,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0.206105058476878,0,0,0,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0.621984346622316,0.576479813667846,0.37872730027914,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0.845302752556,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,3.34952292343276,2.37190332345469,2.82354679815446,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,2.06768026122887,0.862856803274467,1.06727557803444,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,0.784306353074702,0,0,0,0.515205058238611,1.37354197227515,1.98022799809411,0,0,0,0,0,0.307007349452259,0.137836572484531,0,0,0.170453254832202,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,3.82318603571188,2.27858874869665,1.90585420366231,3.29089818468955,0,2.70015718619057,3.17250070517708,0,0,0,0.743212700502875,1.87549976869378,6.26048221466044,1.27541018183058,1.1974762285969,0.957526850661834,0.846694330895531,0.973865820823666,2.24637742490767,0.912938716132769,2.19351854082233,0,0.677167111206413,2.08764497634809,3.22879531505676,2.98092366383228,3.43505344755765,0.614481528616916,0.447352215784832,1.33479313369527,0.390776190804081,0.278406173895242,2.46174797895425,2.70455678475983,1.33228787199128,4.22961015263549,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0.211125408127993,0.398495976502139,1.10513566212459,0,0,1.35393286007176,0,0,0,0.511572370226872,0.493217028184668,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0,0,0,4.08773192782946,0.784901281975124,3.65665700180344,0,0,0,0,4.29128763247022,0,0,0,0,0,0.353830258013357,0.611030144933625,0.593042257361244,0.247127877893006,0.104421949505455,0.067401132980677,0,0,0.91227394607833,0,0,0,0,0,0.126373159256976,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.387956065953678,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0.415440338029185,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0.328370082997356,0,0,0,0,0,0,0,0,0.854299300541557,0.471612915298998,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,1.55888247071511,0.398594520940089,0.981392365535065,0,0,0,0.39997479170986,0.960225567247268,0.516644938982447,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0.3943087250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| ||
|short_description=p12@ITGA4 | |||
}} | }} |
Latest revision as of 21:12, 18 September 2015
Short description: | p12@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_ITGA4_5end |
Coexpression cluster: | C1481_CD4_CD8_thymus_CD14CD16_CD14_granulocyte_CD19 |
Association with transcript: | -40bp_to_ENST00000478440_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.92e-38 | 52 |
lymphocyte | 2.47e-37 | 53 |
common lymphoid progenitor | 2.47e-37 | 53 |
hematopoietic stem cell | 2.13e-35 | 168 |
hematopoietic cell | 1.12e-32 | 177 |
hematopoietic oligopotent progenitor cell | 5.97e-32 | 161 |
hematopoietic multipotent progenitor cell | 5.97e-32 | 161 |
nongranular leukocyte | 3.00e-28 | 115 |
leukocyte | 9.59e-26 | 136 |
mature alpha-beta T cell | 5.62e-24 | 18 |
alpha-beta T cell | 5.62e-24 | 18 |
immature T cell | 5.62e-24 | 18 |
mature T cell | 5.62e-24 | 18 |
immature alpha-beta T cell | 5.62e-24 | 18 |
hematopoietic lineage restricted progenitor cell | 6.54e-24 | 120 |
T cell | 9.67e-24 | 25 |
pro-T cell | 9.67e-24 | 25 |
CD8-positive, alpha-beta T cell | 3.31e-23 | 11 |
B cell | 3.00e-16 | 14 |
lymphocyte of B lineage | 8.77e-12 | 24 |
pro-B cell | 8.77e-12 | 24 |
mesenchymal cell | 6.41e-09 | 354 |
connective tissue cell | 6.57e-09 | 361 |
natural killer cell | 5.28e-07 | 3 |
pro-NK cell | 5.28e-07 | 3 |
motile cell | 8.69e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
blood | 2.21e-11 | 15 |
haemolymphatic fluid | 2.21e-11 | 15 |
organism substance | 2.21e-11 | 15 |
hemopoietic organ | 2.64e-10 | 7 |
immune organ | 2.64e-10 | 7 |
hematopoietic system | 3.78e-09 | 98 |
blood island | 3.78e-09 | 98 |
connective tissue | 3.07e-08 | 371 |
hemolymphoid system | 1.17e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.50e-12 | 39 |
hematologic cancer | 4.25e-12 | 51 |
immune system cancer | 4.25e-12 | 51 |
myeloid leukemia | 1.47e-09 | 31 |