FFCP PHASE1:Hg19::chr4:158234555..158234556,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:158234555..158234556,+ to FFCP PHASE1:Hg19::chr4:158234555..158234556,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:158234555..158234556,+ | |||
|coexpression_cluster_id=C728 | |||
|description=CAGE_peak_at_chr4:158234555..158234556,+ | |||
|id=chr4:158234555..158234556,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.63e-54!42;CL:0000860!1.61e-50!45;CL:0000839!1.28e-39!70;CL:0000766!2.81e-39!76;CL:0000557!5.52e-39!71;CL:0002194!6.49e-34!63;CL:0000576!6.49e-34!63;CL:0000040!6.49e-34!63;CL:0000559!6.49e-34!63;CL:0002009!1.01e-32!65;CL:0000763!7.67e-27!112;CL:0000049!7.67e-27!112;CL:0000738!8.59e-24!140;CL:0002031!1.32e-23!124;CL:0002032!3.39e-19!165;CL:0000837!3.39e-19!165;CL:0002087!6.50e-19!119;CL:0000037!3.79e-18!172;CL:0000566!3.79e-18!172;CL:0000988!8.63e-17!182;CL:0002274!1.03e-09!5;CL:0000457!1.03e-09!5;CL:0002191!1.03e-09!5;CL:0000097!1.03e-09!5;CL:0000831!1.03e-09!5;CL:0002028!1.03e-09!5;CL:0002393!6.78e-09!9;CL:0002397!6.78e-09!9;CL:0000134!4.55e-08!358;CL:0002320!8.92e-08!365;CL:0000875!1.26e-07!3;CL:0002396!1.26e-07!3;CL:0000219!9.55e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000097;2.10e-28;5!CL:0000163;4.20e-16;9!CL:0000860;1.87e-15;33!CL:0002057;1.87e-15;33!CL:0000766;1.60e-13;69!CL:0000576;1.29e-12;48!CL:0000473;7.92e-12;39!CL:0000234;7.92e-12;39!CL:0000763;1.18e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.11e-29,72;CL:0000097,2.77e-28,5;CL:0002028,2.77e-28,5;CL:0000839,1.60e-26,66;CL:0000557,4.05e-26,67;CL:0000860,1.53e-22,42;CL:0002057,1.53e-22,42;CL:0000473,1.17e-19,48;CL:0000234,1.17e-19,48;CL:0000763,4.06e-19,108;CL:0000049,4.06e-19,108;CL:0000163,4.90e-16,9;CL:0002194,1.30e-15,59;CL:0000576,1.30e-15,59;CL:0000040,1.30e-15,59;CL:0000559,1.30e-15,59;CL:0002009,4.32e-15,61;CL:0000738,5.36e-15,136;CL:0002031,2.91e-14,120;CL:0002032,1.63e-12,161;CL:0000837,1.63e-12,161;CL:0000037,6.00e-12,168;CL:0000988,2.76e-11,177;CL:0002087,9.35e-08,115;CL:0002393,9.52e-08,9;CL:0002397,9.52e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-12;42!CL:0000049;2.18e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.56e-34!80;UBERON:0001474!3.20e-31!86;UBERON:0004765!9.63e-26!101;UBERON:0001434!9.63e-26!101;UBERON:0002390!1.96e-25!102;UBERON:0003061!1.96e-25!102;UBERON:0002193!1.19e-22!112;UBERON:0002405!6.55e-22!115;UBERON:0002204!1.56e-14!167;UBERON:0003081!7.19e-11!216;UBERON:0002384!2.24e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.80e-23,76;UBERON:0001474,3.08e-21,82;UBERON:0004765,2.74e-19,90;UBERON:0002405,1.21e-18,93;UBERON:0002390,1.19e-17,98;UBERON:0003061,1.19e-17,98;UBERON:0001434,2.77e-17,100;UBERON:0002193,6.07e-16,108;UBERON:0002204,5.66e-10,167;UBERON:0003081,5.19e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32224184974114,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.727752183563449,0,0.411167888021826,1.85823822537062,0.28769239232215,0.256160706529101,0,0,0.645484683583826,2.70852973188684,0.188242339542605,0.545812300115692,0.224723484445085,1.53041946185451,0,4.47535988059329,0,0.398927315243264,0,0,0,1.24564449799115,0,1.0429658368404,0.434377689410233,0,0,0.632924774881769,0,1.4882300997553,0.419317291016752,0,0.750884464207532,0,0,2.78483348078726,0.91332076882317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.883817722424512,0.886135578334485,0.270803863765016,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93923419527467,2.30591925467138,2.14612136824846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,2.23300811812344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32224184974114,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.727752183563449,0,0.411167888021826,1.85823822537062,0.28769239232215,0.256160706529101,0,0,0.645484683583826,2.70852973188684,0.188242339542605,0.545812300115692,0.224723484445085,1.53041946185451,0,4.47535988059329,0,0.398927315243264,0,0,0,1.24564449799115,0,1.0429658368404,0.434377689410233,0,0,0.632924774881769,0,1.4882300997553,0.419317291016752,0,0.750884464207532,0,0,2.78483348078726,0.91332076882317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.883817722424512,0.886135578334485,0.270803863765016,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93923419527467,2.30591925467138,2.14612136824846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,2.23300811812344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:158234555..158234556,+ | |||
}} | }} |
Latest revision as of 02:43, 30 July 2015
Short description: | p@chr4:158234555..158234556, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:158234555..158234556, + |
Coexpression cluster: | C728_Mast_CD14_Basophils_chorionic_immature_Monocytederived_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.11e-29 | 72 |
mast cell | 2.77e-28 | 5 |
basophil mast progenitor cell | 2.77e-28 | 5 |
myeloid lineage restricted progenitor cell | 1.60e-26 | 66 |
granulocyte monocyte progenitor cell | 4.05e-26 | 67 |
classical monocyte | 1.53e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-22 | 42 |
defensive cell | 1.17e-19 | 48 |
phagocyte | 1.17e-19 | 48 |
myeloid cell | 4.06e-19 | 108 |
common myeloid progenitor | 4.06e-19 | 108 |
endocrine cell | 4.90e-16 | 9 |
monopoietic cell | 1.30e-15 | 59 |
monocyte | 1.30e-15 | 59 |
monoblast | 1.30e-15 | 59 |
promonocyte | 1.30e-15 | 59 |
macrophage dendritic cell progenitor | 4.32e-15 | 61 |
leukocyte | 5.36e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 2.91e-14 | 120 |
hematopoietic oligopotent progenitor cell | 1.63e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.63e-12 | 161 |
hematopoietic stem cell | 6.00e-12 | 168 |
hematopoietic cell | 2.76e-11 | 177 |
nongranular leukocyte | 9.35e-08 | 115 |
intermediate monocyte | 9.52e-08 | 9 |
CD14-positive, CD16-positive monocyte | 9.52e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.80e-23 | 76 |
bone element | 3.08e-21 | 82 |
skeletal element | 2.74e-19 | 90 |
immune system | 1.21e-18 | 93 |
hematopoietic system | 1.19e-17 | 98 |
blood island | 1.19e-17 | 98 |
skeletal system | 2.77e-17 | 100 |
hemolymphoid system | 6.07e-16 | 108 |
musculoskeletal system | 5.66e-10 | 167 |
lateral plate mesoderm | 5.19e-08 | 203 |