FFCP PHASE1:Hg19::chr6:11111950..11111959,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=405754 | |EntrezGene=405754 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33823 | |HGNC=33823 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003mzt.2_5end | |||
|cluster_id=chr6:11111950..11111959,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_ERVFRD-1_5end | |||
|id=chr6:11111950..11111959,- | |||
|ontology_enrichment_celltype=CL:0002274!5.22e-15!5;CL:0000457!5.22e-15!5;CL:0002191!5.22e-15!5;CL:0000097!5.22e-15!5;CL:0000831!5.22e-15!5;CL:0002028!5.22e-15!5;CL:0000163!1.62e-11!9;CL:0000213!1.93e-09!57;CL:0000215!1.93e-09!57;CL:0000039!2.03e-09!7;CL:0000586!2.03e-09!7;CL:0002586!3.75e-09!3;CL:0005020!1.25e-07!6;CL:0002138!1.25e-07!6;CL:0005022!1.25e-07!6;CL:0000149!6.12e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000097;8.62e-37;5!CL:0000163;3.42e-29;9!CL:0002188;2.57e-13;5!CL:0002138;2.39e-11;6!CL:0002586;8.67e-11;3!CL:1000746;1.16e-09;7!CL:1000612;1.16e-09;7!CL:0000149;2.65e-08;4!CL:0000213;5.93e-08;58!CL:0000215;5.93e-08;58!CL:0000115;6.65e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,8.62e-37,5;CL:0002028,8.62e-37,5;CL:0000163,3.42e-29,9;CL:0002188,2.41e-13,5;CL:0005020,2.48e-11,6;CL:0002138,2.48e-11,6;CL:0005022,2.48e-11,6;CL:0002586,8.67e-11,3;CL:0000213,1.25e-10,58;CL:0000215,1.25e-10,58;CL:1000746,1.11e-09,7;CL:1000612,1.11e-09,7;CL:0002078,4.53e-09,45;CL:0000115,7.28e-09,36;CL:0000149,2.65e-08,4;CL:0000151,6.60e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;2.39e-11;6!UBERON:0003124;7.56e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001781!3.75e-09!3;UBERON:0001782!3.75e-09!3;UBERON:0005424!3.75e-09!3;UBERON:0002465!4.59e-09!10;UBERON:0000966!6.34e-09!5;UBERON:0005388!6.34e-09!5;UBERON:0001802!6.34e-09!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.67e-11;3!UBERON:0001782;8.67e-11;3!UBERON:0000074;1.16e-09;7!UBERON:0001229;1.16e-09;7!UBERON:0001473;1.24e-08;8!UBERON:0004536;1.24e-08;8!UBERON:0006558;1.24e-08;8!UBERON:0001851;7.37e-08;15!UBERON:0000353;1.05e-07;15!UBERON:0002465;5.38e-07;10!UBERON:0000966;8.41e-07;5!UBERON:0005388;8.41e-07;5!UBERON:0001802;8.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,8.67e-11,3;UBERON:0005424,8.67e-11,3;UBERON:0010532,1.11e-09,7;UBERON:0000074,1.11e-09,7;UBERON:0001229,1.11e-09,7;UBERON:0001230,1.11e-09,7;UBERON:0003220,1.11e-09,7;UBERON:0005749,1.11e-09,7;UBERON:0004199,1.11e-09,7;UBERON:0004209,1.11e-09,7;UBERON:0004198,1.11e-09,7;UBERON:0001473,1.27e-08,8;UBERON:0004536,1.27e-08,8;UBERON:0006558,1.27e-08,8;UBERON:0005103,1.57e-08,8;UBERON:0000083,1.57e-08,8;UBERON:0009201,1.57e-08,8;UBERON:0006553,1.57e-08,8;UBERON:0003074,1.57e-08,8;UBERON:0003060,1.57e-08,8;UBERON:0001781,2.65e-08,4;UBERON:0001851,7.18e-08,15;UBERON:0000353,1.01e-07,15;UBERON:0000080,1.24e-07,9;UBERON:0002120,1.24e-07,9;UBERON:0004875,1.24e-07,9;UBERON:0005721,1.24e-07,9;UBERON:0005754,1.24e-07,9;UBERON:0007297,1.24e-07,9;UBERON:0002465,5.49e-07,10 | |||
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| 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| ||
|short_description=p1@ERVFRD-1 | |||
}} | }} |
Latest revision as of 19:56, 19 September 2015
Short description: | p1@ERVFRD-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ERVFRD-1_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_uc003mzt.2_5end |
EntrezGene: | ERVFRD-1 |
HGNC: | 33823 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 8.62e-37 | 5 |
basophil mast progenitor cell | 8.62e-37 | 5 |
endocrine cell | 3.42e-29 | 9 |
glomerular endothelial cell | 2.41e-13 | 5 |
lymphangioblast | 2.48e-11 | 6 |
endothelial cell of lymphatic vessel | 2.48e-11 | 6 |
vascular lymphangioblast | 2.48e-11 | 6 |
retinal pigment epithelial cell | 8.67e-11 | 3 |
lining cell | 1.25e-10 | 58 |
barrier cell | 1.25e-10 | 58 |
glomerular cell | 1.11e-09 | 7 |
kidney corpuscule cell | 1.11e-09 | 7 |
meso-epithelial cell | 4.53e-09 | 45 |
endothelial cell | 7.28e-09 | 36 |
visual pigment cell | 2.65e-08 | 4 |
secretory cell | 6.60e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 8.67e-11 | 3 |
presumptive retinal pigmented epithelium | 8.67e-11 | 3 |
primitive nephron | 1.11e-09 | 7 |
renal glomerulus | 1.11e-09 | 7 |
renal corpuscle | 1.11e-09 | 7 |
glomerular capsule | 1.11e-09 | 7 |
metanephric mesenchyme | 1.11e-09 | 7 |
glomerular tuft | 1.11e-09 | 7 |
S-shaped body | 1.11e-09 | 7 |
renal vesicle | 1.11e-09 | 7 |
comma-shaped body | 1.11e-09 | 7 |
lymphatic vessel | 1.27e-08 | 8 |
lymph vasculature | 1.27e-08 | 8 |
lymphatic part of lymphoid system | 1.27e-08 | 8 |
mesonephric epithelium | 1.57e-08 | 8 |
mesonephric tubule | 1.57e-08 | 8 |
nephric duct | 1.57e-08 | 8 |
renal duct | 1.57e-08 | 8 |
mesonephric duct | 1.57e-08 | 8 |
pronephric duct | 1.57e-08 | 8 |
layer of retina | 2.65e-08 | 4 |
cortex | 7.18e-08 | 15 |
parenchyma | 1.01e-07 | 15 |
mesonephros | 1.24e-07 | 9 |
pronephros | 1.24e-07 | 9 |
nephrogenic cord | 1.24e-07 | 9 |
pronephric mesoderm | 1.24e-07 | 9 |
rostral part of nephrogenic cord | 1.24e-07 | 9 |
presumptive pronephric mesoderm | 1.24e-07 | 9 |
lymphoid system | 5.49e-07 | 10 |