FFCP PHASE1:Hg19::chr9:139744298..139744325,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:139744298..139744325,+ to FFCP PHASE1:Hg19::chr9:139744298..139744325,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29085 | |EntrezGene=29085 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30033 | |HGNC=30033 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=67bp_to_ENST00000463215_5end | |||
|cluster_id=chr9:139744298..139744325,+ | |||
|coexpression_cluster_id=C2940 | |||
|description=CAGE_peak_5_at_PHPT1_5end | |||
|id=chr9:139744298..139744325,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.86e-21!180;CL:0000220!1.23e-14!246;CL:0002321!1.43e-14!248;CL:0000057!2.28e-10!75;CL:0000066!3.81e-10!254;CL:0000222!2.29e-09!119;CL:0000183!2.64e-09!59;CL:0000680!8.30e-09!57;CL:0000056!8.30e-09!57;CL:0000355!8.30e-09!57;CL:0000548!1.81e-08!679;CL:0000004!1.81e-08!679;CL:0000255!1.81e-08!679;CL:0000187!3.71e-08!54;CL:0000192!4.93e-08!42;CL:0000514!4.93e-08!42;CL:0000012!6.40e-08!682;CL:0000393!7.28e-07!60;CL:0000211!7.28e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.36e-12,250;CL:0000057,4.03e-10,76;CL:0000222,1.01e-08,121;CL:0000680,1.41e-08,58;CL:0000056,1.41e-08,58;CL:0000355,1.41e-08,58;CL:0000187,7.24e-08,55;CL:0000192,2.15e-07,43;CL:0000514,2.15e-07,43;CL:0000066,2.63e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!3.98e-19!238;UBERON:0009142!3.98e-19!238;UBERON:0000481!4.20e-16!347;UBERON:0005256!2.60e-15!143;UBERON:0002100!5.30e-14!216;UBERON:0000914!7.28e-13!83;UBERON:0002329!7.28e-13!83;UBERON:0003077!7.28e-13!83;UBERON:0003059!7.28e-13!83;UBERON:0007282!7.28e-13!83;UBERON:0009618!7.28e-13!83;UBERON:0007285!7.28e-13!83;UBERON:0000475!9.61e-12!365;UBERON:0000486!2.29e-11!82;UBERON:0004119!3.52e-11!169;UBERON:0000925!3.52e-11!169;UBERON:0006595!3.52e-11!169;UBERON:0004290!3.40e-10!70;UBERON:0001134!4.37e-09!61;UBERON:0002036!4.37e-09!61;UBERON:0003082!4.37e-09!61;UBERON:0003102!9.60e-09!95;UBERON:0001007!9.92e-09!155;UBERON:0001555!9.92e-09!155;UBERON:0007026!9.92e-09!155;UBERON:0002385!1.23e-08!63;UBERON:0001015!1.23e-08!63;UBERON:0000383!1.23e-08!63;UBERON:0001737!1.43e-07!9;UBERON:0004921!2.49e-07!129;UBERON:0004185!2.49e-07!129;UBERON:0000490!3.24e-07!138;UBERON:0000077!4.62e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.81e-08;9!UBERON:0001557;1.81e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.42e-13,160;UBERON:0009142,2.42e-13,160;UBERON:0005256,3.38e-11,122;UBERON:0007503,5.08e-11,78;UBERON:0000486,9.94e-11,83;UBERON:0002329,8.72e-10,71;UBERON:0003059,8.72e-10,71;UBERON:0007282,8.72e-10,71;UBERON:0004290,8.72e-10,71;UBERON:0009618,8.72e-10,71;UBERON:0007524,8.90e-10,73;UBERON:0002100,1.93e-09,199;UBERON:0003077,2.16e-09,72;UBERON:0007285,2.16e-09,72;UBERON:0003102,2.68e-09,99;UBERON:0001134,1.16e-08,62;UBERON:0002036,1.16e-08,62;UBERON:0003082,1.16e-08,62;UBERON:0004119,1.20e-08,160;UBERON:0000925,1.20e-08,160;UBERON:0006595,1.20e-08,160;UBERON:0001737,1.99e-08,9;UBERON:0002385,2.20e-08,64;UBERON:0001015,2.20e-08,64;UBERON:0000383,2.20e-08,64 | |||
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| ||
|short_description=p5@PHPT1 | |||
}} | }} |
Latest revision as of 13:53, 16 September 2015
Short description: | p5@PHPT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PHPT1_5end |
Coexpression cluster: | C2940_renal_hairy_Mesenchymal_leiomyoblastoma_small_Hep2_Wilms |
Association with transcript: | 67bp_to_ENST00000463215_5end |
EntrezGene: | PHPT1 |
HGNC: | 30033 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.36e-12 | 250 |
fibroblast | 4.03e-10 | 76 |
mesodermal cell | 1.01e-08 | 121 |
muscle precursor cell | 1.41e-08 | 58 |
myoblast | 1.41e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.41e-08 | 58 |
muscle cell | 7.24e-08 | 55 |
smooth muscle cell | 2.15e-07 | 43 |
smooth muscle myoblast | 2.15e-07 | 43 |
epithelial cell | 2.63e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.42e-13 | 160 |
entire embryonic mesenchyme | 2.42e-13 | 160 |
trunk mesenchyme | 3.38e-11 | 122 |
epithelial vesicle | 5.08e-11 | 78 |
multilaminar epithelium | 9.94e-11 | 83 |
somite | 8.72e-10 | 71 |
presomitic mesoderm | 8.72e-10 | 71 |
presumptive segmental plate | 8.72e-10 | 71 |
dermomyotome | 8.72e-10 | 71 |
trunk paraxial mesoderm | 8.72e-10 | 71 |
dense mesenchyme tissue | 8.90e-10 | 73 |
trunk | 1.93e-09 | 199 |
paraxial mesoderm | 2.16e-09 | 72 |
presumptive paraxial mesoderm | 2.16e-09 | 72 |
surface structure | 2.68e-09 | 99 |
skeletal muscle tissue | 1.16e-08 | 62 |
striated muscle tissue | 1.16e-08 | 62 |
myotome | 1.16e-08 | 62 |
endoderm-derived structure | 1.20e-08 | 160 |
endoderm | 1.20e-08 | 160 |
presumptive endoderm | 1.20e-08 | 160 |
larynx | 1.99e-08 | 9 |
muscle tissue | 2.20e-08 | 64 |
musculature | 2.20e-08 | 64 |
musculature of body | 2.20e-08 | 64 |